RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PTDSS2Q9BVG9 487 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SLC19A3Q9BZV2 496 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DNTTIP1Q9H147 329 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 C1orf198Q9H425 327 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 EXO5Q9H790 373 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZMAT3Q9HA38 289 aaKnown RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 GDE1Q9NZC3 331 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 MYEF2Q9P2K5 600 aaKnown RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DUX4Q9UBX2 424 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 KCNG2Q9UJ96 466 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 LAMP5Q9UJQ1 280 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 PCOLCE2Q9UKZ9 415 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 TRIOO75962 3097 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 EFCAB7A8K855 629 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 K7EQS6 105 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 CCSO14618 274 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 KCNAB3O43448 404 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 DOK2O60496 412 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 MELTFP08582 738 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 POU2F2P09086 479 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ASAH2BP0C7U1 165 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 LIPCP11150 499 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 MGMTP16455 207 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 CFPP27918 469 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SDHAP31040 664 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 PRSS3P35030 304 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 KIR2DL1P43626 348 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RAB38P57729 211 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SSBP1Q04837 148 aaKnown RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZNHIT3Q15649 155 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ALG10Q5BKT4 473 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM196Q5HYL7 178 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ARHGAP40Q5TG30 622 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF776Q68DI1 518 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ELP2Q6IA86 826 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 FAM166AQ6J272 317 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 JMJD6Q6NYC1 403 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 STEAP1BQ6NZ63 245 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SLC35D2Q76EJ3 337 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 TMED4Q7Z7H5 227 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ATG4DQ86TL0 474 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 JAZF1Q86VZ6 243 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 GABRG1Q8N1C3 465 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 ARHGEF39Q8N4T4 335 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 C10orf53Q8N6V4 93 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 OR1J2Q8NGS2 313 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 OR10Z1Q8NGY1 313 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 C16orf52Q8NHV5 167 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 GPX8Q8TED1 209 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RSC1A1Q92681 617 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 FAM131CQ96AQ9 280 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 FAM3DQ96BQ1 224 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SEH1LQ96EE3 360 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 KTI12Q96EK9 354 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 LRRC46Q96FV0 321 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 MNTQ99583 582 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SYT4Q9H2B2 425 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 SLC6A15Q9H2J7 730 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 TCEAL2Q9H3H9 227 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-212ENST00000552491 MMP25Q9NPA2 562 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 RASL12Q9NYN1 266 aa4.9□□□□□ -1.63
LIMA1-212ENST00000552491 A0A0A6YYC8 382 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LINC01553A4QN01 128 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 WIPF3A6NGB9 483 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PCP4L1A6NKN8 68 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 I3L1I5 382 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 GMFGO60234 142 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PRAMEF2O60811 474 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 APBB3O95704 486 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PMS2P2O95744 297 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CELA2BP08218 269 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF735P0CB33 412 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 UBBP0CG47 229 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 UBCP0CG48 685 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 APEHP13798 732 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 RAB3AP20336 220 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CCKBRP32239 447 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LUMP51884 338 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 RPS27AP62979 156 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 UBA52P62987 128 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 DEFA5Q01523 94 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 EIF2B5Q13144 721 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF169Q14929 603 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ITPRIPL2Q3MIP1 535 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MOGAT2Q3SYC2 334 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LRRC37A5PQ49AS3 106 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 KLHL26Q53HC5 615 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MANEAQ5SRI9 462 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ATPAF1Q5TC12 328 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 FNDC7Q5VTL7 733 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 C1QL3Q5VWW1 255 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR10K2Q6IF99 312 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PTCRAQ6ISU1 281 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MRPL14Q6P1L8 145 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MOB3CQ70IA8 216 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 NDUFAF7Q7L592 441 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MDGA2Q7Z553 956 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF546Q86UE3 836 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MCATQ8IVS2 390 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PM20D2Q8IYS1 436 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms