RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MPV17P39210 176 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 GDNFP39905 211 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RPS5P46782 204 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SERPINB8P50452 374 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 FOXA1P55317 472 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 BTG1P62324 171 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 KCNJ10P78508 379 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 EMX1Q04741 257 aaPredicted RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 MFSD13AQ14CX5 517 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SMU1Q2TAY7 513 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 FAM153CQ494X1 144 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 GPAT3Q53EU6 434 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF678Q5SXM1 525 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 THEM4Q5T1C6 240 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 CLEC6AQ6EIG7 209 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 ZFAND6Q6FIF0 208 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SLC27A4Q6P1M0 643 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 PIWIL3Q7Z3Z3 882 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RNF144BQ7Z419 303 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 CCDC91Q7Z6B0 441 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RNF130Q86XS8 419 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 LYSMD2Q8IV50 215 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 LRRC8AQ8IWT6 810 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SKA3Q8IX90 412 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 DDIASQ8IXT1 998 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 CADM2Q8N3J6 435 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 KLHDC1Q8N7A1 406 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 CCNYL1Q8N7R7 359 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 OR7A2PQ8NGA2 310 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 OR56A1Q8NGH5 318 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 OR6N1Q8NGY5 312 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 MUC7Q8TAX7 377 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 XAGE5Q8WWM1 108 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 LHX4Q969G2 390 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 ZG16BQ96DA0 208 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 THOC1Q96FV9 657 aaKnown RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF75AQ96N20 296 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 OSBPL9Q96SU4 736 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 ASCL2Q99929 193 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SH3GL3Q99963 347 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 TRIM15Q9C019 465 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SEMA6AQ9H2E6 1030 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 MSL2Q9HCI7 577 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 B3GAT2Q9NPZ5 323 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 RRAGDQ9NQL2 400 aaPredicted RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.96□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM106BQ9NUM4 274 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 EXD2Q9NVH0 621 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SIRT5Q9NXA8 310 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 SLC35A3Q9Y2D2 325 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 FIS1Q9Y3D6 152 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 USH1CQ9Y6N9 552 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 DNAH3Q8TD57 4116 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 HYDINQ4G0P3 5121 aa3.96□□□□□ -1.78
LIMS1-214ENST00000542845 DYNC2H1Q8NCM8 4307 aaKnown RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 IGHV3-64DA0A0J9YX35 117 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 IQCMA0A1B0GVH7 501 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 A0A1W2PRD5 423 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 A0A1W2PRF3 423 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 A0A1W2PRM7 423 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 ZSCAN5BA6NJL1 495 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 DUXAA6NLW8 204 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 CEACAM18A8MTB9 384 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 A8MVM7 634 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 A8MXK9 166 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 F5H0A9 414 aaPredicted RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 POC1B-GALNT4F8VUJ3 575 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 MGRN1O60291 552 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 TSPAN9O75954 239 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 URI1O94763 535 aaPredicted RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 C6orf47O95873 294 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 IGHV3-13P01766 116 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 ENO1P06733 434 aaKnown RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 TFPTP0C1Z6 253 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 GKN3PP0CG01 181 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 NHLRC4P0CG21 123 aaPredicted RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 CD28P10747 220 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 PNMTP11086 282 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 LYL1P12980 280 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 RPL4P36578 427 aaKnown RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 TGFBR2P37173 567 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 MDH2P40926 338 aaKnown RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 FRKP42685 505 aaPredicted RBP3.95□□□□□ -1.78
LIMS1-214ENST00000542845 ETV4P43268 484 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 MMP15P51511 669 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 P2RY4P51582 365 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 BPIFB3P59826 476 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 CD83Q01151 205 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 PAX2Q02962 417 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 CALCOCO2Q13137 446 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 PMS2P3Q13401 168 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 TBC1D28Q2M2D7 210 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 ZNF718Q3SXZ3 478 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 GALNTL6Q49A17 601 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM155Q4W5P6 130 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 FAM209BQ5JX69 171 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 C1orf140Q5VVS0 124 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 TMEM53Q6P2H8 277 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 ADAMTSL5Q6ZMM2 481 aa3.95□□□□□ -1.78
LIMS1-214ENST00000542845 FRRS1Q6ZNA5 592 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms