RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PTAFRP25105 342 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SLC6A6P31641 620 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 PYCR1P32322 319 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 MPIP34949 423 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 CD79BP40259 229 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 PRLHRP49683 370 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 RAB5CP51148 216 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 OR10A3P58181 314 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 NXPH1P58417 271 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TAS2R38P59533 333 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SIRPAP78324 504 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TMEM115Q12893 351 aaPredicted RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 ZNF234Q14588 700 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 ARHGAP19Q14CB8 494 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 PDGFRLQ15198 375 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SYPL1Q16563 259 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 ZXDCQ2QGD7 858 aaPredicted RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 SLC25A35Q3KQZ1 300 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 FAM74A3Q4VXF1 159 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 MPPE1Q53F39 396 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 VWA2Q5GFL6 755 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TEX30Q5JUR7 227 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 C10orf91Q5T1B1 145 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 ABHD17BQ5VST6 288 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 AWAT2Q6E213 333 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 HEPHL1Q6MZM0 1159 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 B3GLCTQ6Y288 498 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 FAM220AQ7Z4H9 259 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 RBM45Q8IUH3 476 aaKnown RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 VRK3Q8IV63 474 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SERPINA12Q8IW75 414 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 LNX2Q8N448 690 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SIRT6Q8N6T7 355 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 DMBX1Q8NFW5 382 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 OR4Q3Q8NH05 313 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 OR52I2Q8NH67 350 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 GANCQ8TET4 914 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SMPDL3BQ92485 455 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 MIB2Q96AX9 1013 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 RAD51AP1Q96B01 352 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 EXOSC8Q96B26 276 aaKnown RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 SGK3Q96BR1 496 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TM4SF18Q96CE8 201 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 HAVCR1Q96D42 359 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SLC41A3Q96GZ6 507 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TMEM41AQ96HV5 264 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 ART5Q96L15 291 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SAMD8Q96LT4 415 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TEAD3Q99594 435 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 MCHR1Q99705 422 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 KRTAP4-12Q9BQ66 201 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 ZNF649Q9BS31 505 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 ZNF471Q9BX82 626 aaPredicted RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 SEMA4CQ9C0C4 833 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 S1PR5Q9H228 398 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 UBQLN3Q9H347 655 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 TMEM185BQ9H7F4 350 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 UBE2ZQ9H832 354 aaPredicted RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 MTHFD2LQ9H903 347 aaPredicted RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 HINT3Q9NQE9 182 aaKnown RBP5.96□□□□□ -1.46
USP28-202ENST00000535607 SLC2A4RGQ9NR83 387 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SLC17A5Q9NRA2 495 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 MMP26Q9NRE1 261 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SLC22A11Q9NSA0 550 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 CNIH4Q9P003 139 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 SERTAD3Q9UJW9 196 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 FBXL4Q9UKA2 621 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 CLEC4AQ9UMR7 237 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 OR51B4Q9Y5P0 310 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 POMT1Q9Y6A1 747 aa5.96□□□□□ -1.46
USP28-202ENST00000535607 NUP214P35658 2090 aaPredicted RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 PRRC2BQ5JSZ5 2229 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 TBC1D3EA0A087X179 549 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 A0A1B0GVC2 190 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 A6NIN4 97 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CPSF4LA6NMK7 179 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 MARCH11A6NNE9 402 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 H7C417 338 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 PSMD9O00233 223 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 SAP18O00422 153 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 SOCS6O14544 535 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 TO15178 435 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 XRCC3O43542 346 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CD8AP01732 235 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 KLKB1P03952 638 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ADH4P08319 380 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 IRF1P10914 325 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ANXA7P20073 488 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 BTF3P20290 206 aaKnown RBP5.95□□□□□ -1.46
USP28-202ENST00000535607 FCARP24071 287 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 EDNRAP25101 427 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 PDHA2P29803 388 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 ACVR1BP36896 505 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 OPRD1P41143 372 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 P2RX1P51575 399 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 NCBP2P52298 156 aaKnown RBP eCLIP5.95□□□□□ -1.46
USP28-202ENST00000535607 TAS2R19P59542 299 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 CD81P60033 236 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 RAB4BP61018 213 aa5.95□□□□□ -1.46
USP28-202ENST00000535607 RAB2AP61019 212 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms