RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 VCX2Q9H322 139 aa2.23□□□□□ -2.05
CD44-233ENST00000531141 ANKRD19PQ9H560 264 aa2.23□□□□□ -2.05
CD44-233ENST00000531141 SGK2Q9HBY8 427 aa2.23□□□□□ -2.05
CD44-233ENST00000531141 PACSIN2Q9UNF0 486 aaPredicted RBP2.23□□□□□ -2.05
CD44-233ENST00000531141 KIF15Q9NS87 1388 aa2.23□□□□□ -2.05
CD44-233ENST00000531141 TRPM2O94759 1503 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 TULP4Q9NRJ4 1543 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 PRXQ9BXM0 1461 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 USP32Q8NFA0 1604 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 PTPN23Q9H3S7 1636 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 A0A0B4J2A0 478 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 IGHV3-66A0A0C4DH42 116 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 GAPDHP04406 335 aaKnown RBP2.22□□□□□ -2.05
CD44-233ENST00000531141 C2P06681 752 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 ZNF823P16415 610 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 SLC2A5P22732 501 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 VHLP40337 213 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CCR8P51685 355 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 UGT2B15P54855 530 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CHIT1Q13231 466 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 ARHGAP19Q14CB8 494 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 FAM83EQ2M2I3 478 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 RSPO1Q2MKA7 263 aaPredicted RBP2.22□□□□□ -2.05
CD44-233ENST00000531141 THOC6Q86W42 341 aaKnown RBP2.22□□□□□ -2.05
CD44-233ENST00000531141 SGK3Q96BR1 496 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 LRRC58Q96CX6 371 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 IFT74Q96LB3 600 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 HSFY1Q96LI6 401 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 MS4A4EQ96PG1 132 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CRACR2AQ9BSW2 395 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 OSBPL10Q9BXB5 764 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 UGT1A7Q9HAW7 530 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 UGT1A10Q9HAW8 530 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 UGT1A8Q9HAW9 530 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 SHPKQ9UHJ6 478 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CLEC4AQ9UMR7 237 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 UNC80Q8N2C7 3258 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 ZFYVE9O95405 1425 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CDC42BPAQ5VT25 1732 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CCNB3Q8WWL7 1395 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 EHBP1L1Q8N3D4 1523 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 COL4A4P53420 1690 aaPredicted RBP2.22□□□□□ -2.05
CD44-233ENST00000531141 PLCH1Q4KWH8 1693 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 THSD7AQ9UPZ6 1657 aa2.22□□□□□ -2.05
CD44-233ENST00000531141 CASP8AP2Q9UKL3 1982 aa2.21□□□□□ -2.05
CD44-233ENST00000531141 NFASCO94856 1347 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 CDHR2Q9BYE9 1310 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 MBD5Q9P267 1494 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 LRP4O75096 1905 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 ERVV-1B6SEH8 477 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 SOX15O60248 233 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 KRTAP5-8O75690 187 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 RETP07949 1114 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 SEC61GP60059 68 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 UBE2HP62256 183 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 SLC7A9P82251 487 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 ZNF77Q15935 545 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 IMMTQ16891 758 aaKnown RBP2.21□□□□□ -2.06
CD44-233ENST00000531141 OR2A2Q6IF42 318 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 LRRC31Q6UY01 552 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 LRRC74BQ6ZQY2 392 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 C10orf71Q711Q0 1435 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 PSTKQ8IV42 348 aaKnown RBP2.21□□□□□ -2.06
CD44-233ENST00000531141 Q8N976 141 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 OR1L4Q8NGR5 311 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 ZFP90Q8TF47 636 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 GEMIN6Q8WXD5 167 aaKnown RBP2.21□□□□□ -2.06
CD44-233ENST00000531141 PLEKHA8Q96JA3 519 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 TSSK3Q96PN8 268 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 PANX2Q96RD6 677 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 CNN2Q99439 309 aaKnown RBP2.21□□□□□ -2.06
CD44-233ENST00000531141 CCT7Q99832 543 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 MFFQ9GZY8 342 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 LINC00597Q9H2U6 94 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 NTN4Q9HB63 628 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 NOX3Q9HBY0 568 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 CD84Q9UIB8 345 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 F11RQ9Y624 299 aaKnown RBP2.21□□□□□ -2.06
CD44-233ENST00000531141 KCPQ6ZWJ8 1503 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 ARHGEF10O15013 1369 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 VCANP13611 3396 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 RGPD3A6NKT7 1758 aaPredicted RBP2.21□□□□□ -2.06
CD44-233ENST00000531141 RGPD4Q7Z3J3 1758 aa2.21□□□□□ -2.06
CD44-233ENST00000531141 PXDNLA1KZ92 1463 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 ABCA3Q99758 1704 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 OVOS2A0A0G2JMS6 1433 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 OVOS2A0A0J9YW53 1432 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 OVOS2Q6IE36 1432 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 RRBP1Q9P2E9 1410 aaKnown RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 IGKV6-21A0A0C4DH24 114 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 A0A1B0GVI7 797 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 A0A1B0GVL5 298 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 INS-IGF2F8WCM5 200 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 HAS3O00219 553 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 CPLX1O14810 134 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 C1orf105O95561 183 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 IGHV2-5P01817 119 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 UBTFL1P0CB47 393 aaPredicted RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 ATP5C1P36542 298 aaKnown RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 NCBP2P52298 156 aaKnown RBP eCLIP2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms