RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	DPY19L2P2	Q6ZN68	376 aa		13.16	□□□□□ -0.3
TRIO-222	ENST00000515144	OR4M1	Q8NGD0	313 aa		13.16	□□□□□ -0.3
TRIO-222	ENST00000515144	C17orf50	Q8WW18	174 aa		13.16	□□□□□ -0.3
TRIO-222	ENST00000515144	NICN1	Q9BSH3	213 aa		13.16	□□□□□ -0.3
TRIO-222	ENST00000515144	YIF1A	O95070	293 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SLC2A10	O95528	541 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	GNB3	P16520	340 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	NKX2-5	P52952	324 aa	Predicted RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	C6orf89	Q6UWU4	347 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	L3MBTL4	Q8NA19	623 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SDHAF2	Q9NX18	166 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SIRPB1	O00241	398 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	POU3F3	P20264	500 aa	Predicted RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	RAB40B	Q12829	278 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	C3AR1	Q16581	482 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	MOG	Q16653	247 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SMRP1	Q8NCR6	262 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	P4HTM	Q9NXG6	502 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	ASH2L	Q9UBL3	628 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	ZNF346	Q9UL40	294 aa	Known RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SLC17A4	Q9Y2C5	497 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	B4GALT1	P15291	398 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	F2R	P25116	425 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	ZNF93	P35789	620 aa	Predicted RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	RPL23A	P62750	156 aa	Known RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	ILK	Q13418	452 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	MORN4	Q8NDC4	146 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	TPPP3	Q9BW30	176 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SNRPB	P14678	240 aa	Known RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	PRKAR1B	P31321	381 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	TRHR	P34981	398 aa	Predicted RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	RNLS	Q5VYX0	342 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SPART	Q8N0X7	666 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	OR2Z1	Q8NG97	314 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	TMIGD2	Q96BF3	282 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	ALKBH3	Q96Q83	286 aa	Predicted RBP	13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	SSX3	Q99909	188 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	RNF32	Q9H0A6	362 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	OCIAD1	Q9NX40	245 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	OR52A1	Q9UKL2	312 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	LCT	P09848	1927 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	TAS2R20	P59543	309 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	FZD2	Q14332	565 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	GPR176	Q14439	515 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	ZNF181	Q2M3W8	571 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	LYPD8	Q6UX82	237 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144		Q6ZTK2	550 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	TMEM106A	Q96A25	262 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	NOX4	Q9NPH5	578 aa		13.15	□□□□□ -0.3
TRIO-222	ENST00000515144	HMGN4	O00479	90 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	ARPC5	O15511	151 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	DHRS4L1	P0CG22	281 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	TRIM23	P36406	574 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	AKR1C1	Q04828	323 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	UBE2F	Q969M7	185 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	SLCO4A1	Q96BD0	722 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	SGK3	Q96BR1	496 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	PLPPR2	Q96GM1	343 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	TMEM100	Q9NV29	134 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	MYOT	Q9UBF9	498 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	POMT2	Q9UKY4	750 aa		13.15	□□□□□ -0.31
TRIO-222	ENST00000515144	RPS27	P42677	84 aa	Known RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	OTUD1	Q5VV17	481 aa	Predicted RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	GGH	Q92820	318 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	STAC	Q99469	402 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	KCNJ15	Q99712	375 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	SLC22A7	Q9Y694	548 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	PMS2P1	A4D2B8	440 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	SLC34A2	O95436	690 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	GIF	P27352	417 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	ABCD3	P28288	659 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	PTGS2	P35354	604 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	SIGLEC14	Q08ET2	396 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	ARHGAP11B	Q3KRB8	267 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	GLYATL3	Q5SZD4	288 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	DPY19L2P1	Q6NXN4	242 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	THAP7	Q9BT49	309 aa	Predicted RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	BARHL1	Q9BZE3	327 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	BABAM2	Q9NXR7	383 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	KIAA1456	Q9P272	454 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	NCBP2L	A6PVI3	153 aa	Known RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	DPM1	O60762	260 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	ETHE1	O95571	254 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	FNDC9	Q8TBE3	224 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	GHSR	Q92847	366 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	SNAPC3	Q92966	411 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	FOXRED1	Q96CU9	486 aa	Predicted RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	RAB4A	P20338	218 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	TGM1	P22735	817 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	POLR2I	P36954	125 aa	Known RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	PCBP4	P57723	403 aa	Known RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	B3GNTL1	Q67FW5	361 aa	Predicted RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	OR52I1	Q8NGK6	324 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	OR1L3	Q8NH93	324 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	ST8SIA4	Q92187	359 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	DVL3	Q92997	716 aa	Predicted RBP	13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	PDCD1LG2	Q9BQ51	273 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	ZNF195	O14628	629 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	TEAD1	P28347	426 aa		13.14	□□□□□ -0.31
TRIO-222	ENST00000515144	TP53I13	Q8NBR0	393 aa	Predicted RBP	13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms