RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ZNF619Q8N2I2 560 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 OR2L13Q8N349 312 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 OR10AC1Q8NH08 325 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 MIB2Q96AX9 1013 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 OR2A5Q96R48 311 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 ZFYVE21Q9BQ24 234 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 MED9Q9NWA0 146 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 KLF15Q9UIH9 416 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 C4orf47A7E2U8 309 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 LINC01565O15544 149 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 P2RX6O15547 441 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 CTSVO60911 334 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 GLSO94925 669 aaPredicted RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 GP1BAP07359 652 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 MAPK3P27361 379 aaPredicted RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 RFC3P40938 356 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 NANOS3P60323 173 aaKnown RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 SNRPNP63162 240 aaKnown RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 CXADRP78310 365 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 DUSP8Q13202 625 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 Q499Y3 187 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 ZNF585AQ6P3V2 769 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 USP53Q70EK8 1073 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 GABRG3Q99928 467 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 TLNRD1Q9H1K6 362 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 WDR13Q9H1Z4 485 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 GAREM1Q9H706 876 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 C2orf42Q9NWW7 574 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 YBX2Q9Y2T7 364 aaKnown RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 ZNF736B4DX44 427 aaPredicted RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 ZNF208O43345 1280 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 SULT1B1O43704 296 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 GPRIN2O60269 458 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 CDC40O60508 579 aaKnown RBP eCLIP8.77□□□□□ -1.01
VCAN-210ENST00000513960 FBXO24O75426 580 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 APBB3O95704 486 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 F13BP05160 661 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 RPA2P15927 270 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 COL9A1P20849 921 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 HNRNPA2B1P22626 353 aaKnown RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 IL13RA1P78552 427 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 RAB11BQ15907 218 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 SLC35F3Q8IY50 421 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 OR4S1Q8NGB4 309 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 NUBPLQ8TB37 319 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 ZPLD1Q8TCW7 415 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 FAM46BQ96A09 425 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 GAS2L1Q99501 681 aaPredicted RBP8.77□□□□□ -1.01
VCAN-210ENST00000513960 RSRP1Q9BUV0 290 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 SLC22A7Q9Y694 548 aa8.77□□□□□ -1.01
VCAN-210ENST00000513960 TMEM272A0A1B0GTI8 110 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 GGT3PA6NGU5 568 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 BCL2L11O43521 198 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 THBS1P07996 1170 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 HOXC4P09017 264 aaPredicted RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 PGAM2P15259 253 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 HPGDP15428 266 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 NME2P22392 152 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 CPT2P23786 658 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 MPGP29372 298 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 GPR18Q14330 331 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 EXOSC6Q5RKV6 272 aaKnown RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 SLC35D2Q76EJ3 337 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 ZNF584Q8IVC4 421 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 GABRG1Q8N1C3 465 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 CDRT4Q8N9R6 151 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 ACBD4Q8NC06 268 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 ELP5Q8TE02 316 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 CCDC3Q9BQI4 270 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 PRSS27Q9BQR3 290 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 CGGBP1Q9UFW8 167 aaPredicted RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 C19orf53Q9UNZ5 99 aaPredicted RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 A0A1W2PQF6 199 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 H0YGG7 62 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 GAAP10253 952 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 OR2B8PP59922 312 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 ARF3P61204 181 aaPredicted RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 SRSF3P84103 164 aaKnown RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 EID2Q8N6I1 236 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 PFDN5Q99471 154 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 ALG12Q9BV10 488 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 SELENOIQ9C0D9 397 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 CHRDQ9H2X0 955 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 MIOXQ9UGB7 285 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 TRAV8-7A0A075B6U6 113 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 H7C417 338 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 CD2P06729 351 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 PVRP15151 417 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 RNASE10Q5GAN6 216 aaKnown RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 C9orf152Q5JTZ5 239 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 LRRC69Q6ZNQ3 347 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 DPY19L4Q7Z388 723 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 TMEM200AQ86VY9 491 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 OOSP2Q86WS3 158 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 TM4SF19Q96DZ7 209 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 BMFQ96LC9 184 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 POLMQ9NP87 494 aaPredicted RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 DHCR7Q9UBM7 475 aaKnown RBP8.76□□□□□ -1.01
VCAN-210ENST00000513960 MTFP1Q9UDX5 166 aa8.76□□□□□ -1.01
VCAN-210ENST00000513960 PCOLCE2Q9UKZ9 415 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms