RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 C19orf47Q8N9M1 422 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 PHOSPHO2Q8TCD6 241 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 CMKLR1Q99788 373 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC19A3Q9BZV2 496 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SHARPINQ9H0F6 387 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 SEMA6CQ9H3T2 930 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 POFUT1Q9H488 388 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 TAS2R8Q9NYW2 309 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 RTTNQ86VV8 2226 aa8.37□□□□□ -1.07
LIMCH1-215ENST00000512632 C2orf16Q68DN1 1984 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 FITM1A5D6W6 292 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 XKRYO14609 159 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 CCSO14618 274 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 AMY2AP04746 511 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF28P17035 718 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 DMWDQ09019 674 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 GLYATL3Q5SZD4 288 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 EEF1A1P5Q5VTE0 462 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM184AQ6ZMB5 413 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 FAM160A2Q8N612 972 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 OR1J4Q8NGS1 313 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 METTL21AQ8WXB1 218 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 MCHR2Q969V1 340 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 B9D1Q9UPM9 204 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 TRIOO75962 3097 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 TUBAL3A6NHL2 446 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 HMSDA8MTL9 139 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 CDC40O60508 579 aaKnown RBP eCLIP8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 ALOX12BO75342 701 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 UTS2O95399 124 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 CTHP32929 405 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 PBX2P40425 430 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 SKP2Q13309 424 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 CHRDL2Q6WN34 429 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF546Q86UE3 836 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 GABRG1Q8N1C3 465 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 GALNT16Q8N428 558 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 CLEC1AQ8NC01 280 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 MNTQ99583 582 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 EYSQ5T1H1 3165 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 TICRRQ7Z2Z1 1910 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 OR6C65A6NJZ3 312 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 SDC3O75056 442 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 CSRP1P21291 193 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 MECP2P51608 486 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 FUT7Q11130 342 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 ELP2Q6IA86 826 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 ASPHD2Q6ICH7 369 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 OR51A2Q8NGJ7 313 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 FAM174AQ8TBP5 190 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 FBXW5Q969U6 566 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 PBX4Q9BYU1 374 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 EXOSC3Q9NQT5 275 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 FANCMQ8IYD8 2048 aa8.36□□□□□ -1.07
LIMCH1-215ENST00000512632 MPZL1O95297 269 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 WNT11O96014 354 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 APEHP13798 732 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 CXCR1P25024 350 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 CSF2RBP32927 897 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 SPOCK1Q08629 439 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 PRTGQ2VWP7 1150 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 MARCH3Q86UD3 253 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 CD163Q86VB7 1156 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 C7orf61Q8IZ16 206 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 C12orf45Q8N5I9 185 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 JAGN1Q8N5M9 183 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 BVESQ8NE79 360 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 OR5M9Q8NGP3 310 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 OR1S1Q8NH92 325 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 OTOSQ8NHW6 89 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 GPBAR1Q8TDU6 330 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TWSG1Q9GZX9 223 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM185BQ9H7F4 350 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TAS2R4Q9NYW5 299 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM14AQ9Y6G1 99 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 SLCO1B1Q9Y6L6 691 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 OR4E1P0C645 316 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 OR1D4P47884 311 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC17A1Q14916 467 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 DNM1P46Q6ZS02 220 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF440Q8IYI8 595 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 BEST3Q8N1M1 668 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 OR4S1Q8NGB4 309 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TOE1Q96GM8 510 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 ASCC3Q8N3C0 2202 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 LOC100289279A0A1B0GTE1 492 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM82A0PJX8 343 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 A8MXK9 166 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 KRBOX1C9JBD0 128 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC17A2O00624 439 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 PLATP00750 562 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 DEFA5Q01523 94 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 MFGE8Q08431 387 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 RASGEF1BQ0VAM2 473 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 TAF13Q15543 124 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 LRFN4Q6PJG9 635 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 CDH26Q8IXH8 852 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 ZSCAN1Q8NBB4 408 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 SEH1LQ96EE3 360 aa8.35□□□□□ -1.07
LIMCH1-215ENST00000512632 NARS2Q96I59 477 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms