RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CD14P08571 375 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 F7P08709 466 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 HOXB2P14652 356 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ITGB7P26010 798 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ABCD3P28288 659 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ARSDP51689 593 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 SEC13P55735 322 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 SEMA3BQ13214 749 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 NSDHLQ15738 373 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 GLYATL3Q5SZD4 288 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 EIF4E3Q8N5X7 224 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 IRF7Q92985 503 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 OR2A14Q96R47 310 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 TP53RKQ96S44 253 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 USB1Q9BQ65 265 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 RTP3Q9BQQ7 232 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 C1QTNF3Q9BXJ4 246 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 BARHL1Q9BZE3 327 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 Q9N2K0 584 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 DCAF16Q9NXF7 216 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ARRDC5A6NEK1 342 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 CHRM4P08173 479 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 GSTP1P09211 210 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 OR4E1P0C645 316 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 GALP22466 123 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 NPY4RP50391 375 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 CSNK1G2P78368 415 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ELOBQ15370 118 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 PRAMEF19Q5SWL8 479 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 Q6ZN92 141 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 OR52I2Q8NH67 350 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ARRDC2Q8TBH0 407 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 UBTD2Q8WUN7 234 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 OR5B2Q96R09 309 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ATOH8Q96SQ7 321 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 NEURL2Q9BR09 285 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 DUXBA0A1W2PPF3 345 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 A6NL46 340 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 HMSDA8MTL9 139 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 LEFTY1O75610 366 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 CD99P14209 185 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 GPX2P18283 190 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 XCR1P46094 333 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ELLP55199 621 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 FOXK2Q01167 660 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 HLA-BQ31612 363 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 LCN15Q6UWW0 184 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 DOK3Q7L591 496 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 ARRDC1Q8N5I2 433 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 SPICQ8N5J4 248 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 AKR1E2Q96JD6 320 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 MBOAT4Q96T53 435 aa10.36□□□□□ -0.75
LIMCH1-208ENST00000508501 A0A1B0GV72 72 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 MT-ATP6P00846 226 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 CLEC3BP05452 202 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 TYRP1P17643 537 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 BCL6P41182 706 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 NHLH1Q02575 133 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 NHLH2Q02577 135 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 SQSTM1Q13501 440 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 FCRLBQ6BAA4 426 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 FAM57BQ71RH2 274 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 SLC26A10Q8NG04 563 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 SCAMP4Q969E2 229 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 GABARAPL3Q9BY60 117 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 IL17CQ9P0M4 197 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 NDRG4Q9ULP0 352 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 FLVCR1Q9Y5Y0 555 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 KIAA1210Q9ULL0 1709 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 H0YIV9 168 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 FZD6O60353 706 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 PMP2P02689 132 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 PMCHP20382 165 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 RPS15P62841 145 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 C19orf57Q0VDD7 668 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 OR7A5Q15622 319 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 C11orf87Q6NUJ2 197 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 SLC16A12Q6ZSM3 486 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 ACOT4Q8N9L9 421 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF738Q8NE65 137 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 SMIM4Q8WVI0 70 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 KLRG1Q96E93 195 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 WSB1Q9Y6I7 421 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF541Q9H0D2 1346 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 CRYM-AS1A6NIL9 109 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF98A6NK75 572 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 CD79AP11912 226 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 MMP15P51511 669 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 EMP3P54852 163 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 GPM6BQ13491 265 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 TPBGQ13641 420 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 TMEM241Q24JQ0 296 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 TMEM184AQ6ZMB5 413 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 OSTM1Q86WC4 334 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 CYB5D2Q8WUJ1 264 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 HGDQ93099 445 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 SLCO4A1Q96BD0 722 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 ZNF426Q9BUY5 554 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 TEX101Q9BY14 249 aa10.35□□□□□ -0.75
LIMCH1-208ENST00000508501 EMCNQ9ULC0 261 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms