RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FRZBQ92765 325 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 NT5C3BQ969T7 300 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 FAM3DQ96BQ1 224 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 RPP21Q9H633 154 aaKnown RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 ZNF430Q9H8G1 570 aaPredicted RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 ISYNA1Q9NPH2 558 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 ZNF629Q9UEG4 869 aaPredicted RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 CTNNA3Q9UI47 895 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 NUP50Q9UKX7 468 aa1.96□□□□□ -2.1
VPS50-219ENST00000495039 MRPS18BQ9Y676 258 aaKnown RBP1.96□□□□□ -2.1
VPS50-219ENST00000495039 PIKFYVEQ9Y2I7 2098 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 A0A1B0GVX0 72 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 F6UB75 175 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 SERPINA3P01011 423 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 SLC2A3P11169 496 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 PSMC3P17980 439 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 CEACAM6P40199 344 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 CSNK1A1P48729 337 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 PLP1P60201 277 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 YWHAGP61981 247 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS50-219ENST00000495039 TWF1Q12792 350 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 STK11Q15831 433 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 SSX2Q16385 188 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 ZSCAN26Q16670 478 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 CEP55Q53EZ4 464 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 ANKRD22Q5VYY1 191 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 TEX43Q6ZNM6 134 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 Q6ZR03 302 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 NANOGNBQ7Z5D8 188 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 BIVMQ86UB2 503 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 LIX1Q8N485 282 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 EID2Q8N6I1 236 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 C15orf56Q8N910 161 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 PLPPR1Q8TBJ4 325 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 FBXO32Q969P5 355 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 CREB3L1Q96BA8 519 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 TUBGCP3Q96CW5 907 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 PDXPQ96GD0 296 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 SPIN2AQ99865 258 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 SPIN2BQ9BPZ2 258 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 CHAC1Q9BUX1 264 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 PLA2G12AQ9BZM1 189 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 PSG8Q9UQ74 426 aa1.95□□□□□ -2.1
VPS50-219ENST00000495039 IGSF9BQ9UPX0 1349 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 IGHV3-74A0A0B4J1X5 117 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 VAMP5O95183 116 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 AIFM1O95831 613 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 NDUFB10O96000 172 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 CT62P0C5K7 136 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 TNNI1P19237 187 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 CHMLP26374 656 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ACTG2P63267 376 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ARG2P78540 354 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 DDX39BQ13838 428 aaKnown RBP1.94□□□□□ -2.1
VPS50-219ENST00000495039 MAJINQ3KP22 176 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 RABL6Q3YEC7 729 aaPredicted RBP1.94□□□□□ -2.1
VPS50-219ENST00000495039 VPS26BQ4G0F5 336 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ABCA11PQ4W5N1 156 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 FBXW9Q5XUX1 488 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ZNF836Q6ZNA1 936 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ASCL5Q7RTU5 278 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 UBALD2Q8IYN6 164 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 PRSS58Q8IYP2 241 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 PDIK1LQ8N165 341 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 SPATA4Q8NEY3 305 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 OR9K2Q8NGE7 335 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 OR1S2Q8NGQ3 325 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 OR10R2Q8NGX6 335 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 GPR151Q8TDV0 419 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 TM4SF18Q96CE8 201 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 SLC25A2Q9BXI2 301 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 PKIBQ9C010 78 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 PARP12Q9H0J9 701 aaKnown RBP1.94□□□□□ -2.1
VPS50-219ENST00000495039 CWH43Q9H720 699 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 WFDC1Q9HC57 220 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ZNF355PQ9NSJ1 428 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 FAM49BQ9NUQ9 324 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 SLC2A8Q9NY64 477 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ZNRD1Q9P1U0 126 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ZNF835Q9Y2P0 537 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 ASB3Q9Y575 518 aa1.94□□□□□ -2.1
VPS50-219ENST00000495039 GPATCH8Q9UKJ3 1502 aaKnown RBP1.94□□□□□ -2.1
VPS50-219ENST00000495039 KIF26AQ9ULI4 1882 aaPredicted RBP1.94□□□□□ -2.1
VPS50-219ENST00000495039 FBN1P35555 2871 aaKnown RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 IGHV5-10-1A0A0J9YXX1 117 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 H0Y8G0 127 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 CDC7O00311 574 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 EEDO75530 441 aaKnown RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 CLIC3O95833 236 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 HLA-DPB1P04440 258 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 BCHEP06276 602 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 ZNF286BP0CG31 522 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 MUC1P15941 1255 aaPredicted RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 NPY1RP25929 384 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 TAGLN2P37802 199 aaKnown RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 SULT1E1P49888 294 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 SSR4P51571 173 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 ATP5IP56385 69 aaPredicted RBP1.93□□□□□ -2.1
VPS50-219ENST00000495039 ESRRGP62508 458 aa1.93□□□□□ -2.1
VPS50-219ENST00000495039 MAB21L1Q13394 359 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms