RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ZNF561Q8N587 486 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ARRDC1Q8N5I2 433 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TEX26Q8N6G2 289 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FAM86B1Q8N7N1 296 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SYT14Q8NB59 555 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR2L3Q8NG85 312 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR7G3Q8NG95 312 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR2T34Q8NGX1 318 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR2L8Q8NGY9 312 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR6F1Q8NGZ6 308 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR2T3Q8NH03 318 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR6X1Q8NH79 312 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RHOXF1Q8NHV9 184 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PSMA8Q8TAA3 256 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 UBA3Q8TBC4 463 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF564Q8TBZ8 553 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZFAND1Q8TCF1 268 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZPLD1Q8TCW7 415 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MAGEE2Q8TD90 523 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZDHHC19Q8WVZ1 309 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CKAP2Q8WWK9 683 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PYDC1Q8WXC3 89 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RAD54LQ92698 747 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FGF14Q92915 247 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FAM162AQ96A26 154 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RFT1Q96AA3 541 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C18orf25Q96B23 403 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RBMXL1Q96E39 390 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 DCUN1D1Q96GG9 259 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SH3YL1Q96HL8 342 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C14orf144Q96I85 54 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SERAC1Q96JX3 654 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C12orf42Q96LP6 360 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FER1L6-AS2Q96M78 137 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RILPQ96NA2 401 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TSSK2Q96PF2 358 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PANX3Q96QZ0 392 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR52B2Q96RD2 323 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ATP6V0BQ99437 205 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SERPINI1Q99574 410 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MAPKAP1Q9BPZ7 522 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C2orf88Q9BSF0 95 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TUBGCP2Q9BSJ2 902 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF577Q9BSK1 485 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OCR1Q9BZK8 76 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 UCK2Q9BZX2 261 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TRIM9Q9C026 710 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NMUR2Q9GZQ4 415 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NAA50Q9GZZ1 169 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 UBQLN3Q9H347 655 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 KAT8Q9H7Z6 458 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MINDY3Q9H8M7 445 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CXorf21Q9HAI6 301 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GNB4Q9HAV0 340 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 HMG20AQ9NP66 347 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 XPNPEP1Q9NQW7 623 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SAR1AQ9NR31 198 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PHPT1Q9NRX4 125 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RGS18Q9NS28 235 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ABCC13Q9NSE7 274 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SLC35D1Q9NTN3 355 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C14orf105Q9NVL8 296 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SMPD3Q9NY59 655 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 VPS54Q9P1Q0 977 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C5AR2Q9P296 337 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IL20RAQ9UHF4 553 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GLS2Q9UI32 602 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ENPP5Q9UJA9 477 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RAB26Q9ULW5 256 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MGAT4BQ9UQ53 548 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GOLT1BQ9Y3E0 138 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 Q9Y3F1 56 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 KLK4Q9Y5K2 254 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NUBP2Q9Y5Y2 271 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PEX16Q9Y5Y5 336 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FKBP7Q9Y680 259 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 STYXL1Q9Y6J8 313 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ADGRG4Q8IZF6 3080 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 BOD1L1Q8NFC6 3051 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZNFX1Q9P2E3 1918 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SPTBN1Q01082 2364 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PDZD2O15018 2839 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NBEAL2Q6ZNJ1 2754 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MYO16Q9Y6X6 1858 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZMYM6O95789 1325 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MYH15Q9Y2K3 1946 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CACNA1EQ15878 2313 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 A0A087WXM4 84 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TRGV8A0A0C4DH27 118 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 A0A1B0GTH9 108 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 A0A1W2PPR1 153 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 C9orf170A2RU37 121 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FAM74A7A6NL05 159 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PDZK1P1A8MUH7 402 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ARHGEF33A8MVX0 844 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PRSS46E5RG02 174 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ANHXE9PGG2 379 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NPIPA7E9PJI5 369 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 H7C2Y5 167 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms