RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SIGLEC11Q96RL6 698 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 ZNF347Q96SE7 839 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 MRPL13Q9BYD1 178 aaKnown RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 IKZF5Q9H5V7 419 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 RMND5AQ9H871 391 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 RNF121Q9H920 327 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 PATZ1Q9HBE1 687 aaKnown RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 UGT2A1Q9Y4X1 527 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 IGHV3OR16-10A0A075B7F0 116 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 HDAC3O15379 428 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 SNNO75324 88 aaPredicted RBP12.91□□□□□ -0.34
MCF2L-228ENST00000487354 PLATP00750 562 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 MT-ND5P03915 603 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 CD80P33681 288 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 POLR2JP52435 117 aaKnown RBP12.91□□□□□ -0.34
MCF2L-228ENST00000487354 KRTAP10-3P60369 221 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 VSNL1P62760 191 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 PAX8Q06710 450 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 MOGQ16653 247 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 LRRC18Q8N456 261 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 KLF14Q8TD94 323 aaPredicted RBP12.91□□□□□ -0.34
MCF2L-228ENST00000487354 AENQ8WTP8 325 aaKnown RBP12.91□□□□□ -0.34
MCF2L-228ENST00000487354 NMD3Q96D46 503 aaKnown RBP12.91□□□□□ -0.34
MCF2L-228ENST00000487354 OR2J1Q9GZK6 312 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 TMEM27Q9HBJ8 222 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 SLAMF8Q9P0V8 285 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 EGFL7Q9UHF1 273 aa12.91□□□□□ -0.34
MCF2L-228ENST00000487354 KMT2CQ8NEZ4 4911 aaKnown RBP12.91□□□□□ -0.34
MCF2L-228ENST00000487354 TRBV5-3A0A0A0MS03 114 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 IGKV1D-43A0A0B4J1Z2 117 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 IQCMA0A1B0GVH7 501 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 C5orf58C9J3I9 102 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 M0R3H8 397 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ICMTO60725 284 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ENTPD5O75356 428 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 PTHP01270 115 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ASAH2BP0C7U1 165 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 STOMP27105 288 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 NCALDP61601 193 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 CDK6Q00534 326 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 RELBQ01201 579 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 SLC3A1Q07837 685 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ZMYND11Q15326 602 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 TMEM155Q4W5P6 130 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 TNFAIP8L3Q5GJ75 292 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 C10orf128Q5T292 105 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 LRIF1Q5T3J3 769 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 GCNT6Q5T4J0 391 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 REEP3Q6NUK4 255 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 TREML1Q86YW5 311 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 PARP8Q8N3A8 854 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ZNF283Q8N7M2 679 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 NOXO1Q8NFA2 376 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 OR52B2Q96RD2 323 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ARHGDIGQ99819 225 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 CITED1Q99966 193 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 ZNF426Q9BUY5 554 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 MSL2Q9HCI7 577 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 SLCO1B3Q9NPD5 702 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 TMEM106BQ9NUM4 274 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 GMEB1Q9Y692 573 aa12.9□□□□□ -0.34
MCF2L-228ENST00000487354 RNF13O43567 381 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 CHP2O43745 196 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 GPANK1O95872 356 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 CH25HO95992 272 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 NGFP01138 241 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 SBK2P0C263 348 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF32P17041 273 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 APLNRP35414 380 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF718Q3SXZ3 478 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 HHATQ5VTY9 493 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF774Q6NX45 483 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 ZNF613Q6PF04 617 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 C16orf87Q6PH81 154 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 SPATC1Q76KD6 591 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 LRRC28Q86X40 367 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-228ENST00000487354 OR4D11Q8NGI4 311 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 AKR7LQ8NHP1 331 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 DCLRE1CQ96SD1 692 aaKnown RBP12.89□□□□□ -0.35
MCF2L-228ENST00000487354 PKP2Q99959 881 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 EGLN1Q9GZT9 426 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 RAD21L1Q9H4I0 556 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 PRDM13Q9H4Q3 707 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 SELENONQ9NZV5 590 aa12.89□□□□□ -0.35
MCF2L-228ENST00000487354 TRPC5OSA6NMA1 111 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 FMO6PO60774 539 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 SLC2A10O95528 541 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 IGHG1P01857 330 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 KITP10721 976 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 CCNOP22674 350 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 AQP1P29972 269 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 CDAP32320 146 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 WDR4P57081 412 aaKnown RBP12.88□□□□□ -0.35
MCF2L-228ENST00000487354 MRPS34P82930 218 aaKnown RBP12.88□□□□□ -0.35
MCF2L-228ENST00000487354 HSF2Q03933 536 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 PLP2Q04941 152 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 CDK5R2Q13319 367 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 NXNQ6DKJ4 435 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 Q6ZR03 302 aa12.88□□□□□ -0.35
MCF2L-228ENST00000487354 RANBP3LQ86VV4 465 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms