RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 GPR139Q6DWJ6 353 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 ZNF620Q6ZNG0 422 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 SLC16A14Q7RTX9 510 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 LRRC75A-AS1Q8N1F1 130 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 FAM169BQ8N8A8 192 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 OR10G2Q8NGC3 310 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 FNDC8Q8TC99 324 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 PERPQ96FX8 193 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 FOXN4Q96NZ1 517 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 DHRS9Q9BPW9 319 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 FAIMQ9NVQ4 179 aa12.82□□□□□ -0.36
USP4-212ENST00000486549 IGHV2OR16-5A0A0B4J2B6 119 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 SLC22A23A1A5C7 686 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 PRSS37A4D1T9 235 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 IMPA2O14732 288 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 MRPS34P82930 218 aaKnown RBP12.81□□□□□ -0.36
USP4-212ENST00000486549 RAB39AQ14964 217 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 SLC36A2Q495M3 483 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 CLEC12AQ5QGZ9 265 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 ZNF770Q6IQ21 691 aaPredicted RBP12.81□□□□□ -0.36
USP4-212ENST00000486549 TMEM53Q6P2H8 277 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 VHLLQ6RSH7 139 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 PTCHD4Q6ZW05 846 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 JAZF1Q86VZ6 243 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 FBXL14Q8N1E6 418 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 OR52L1Q8NGH7 329 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 NABP1Q96AH0 204 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 SYT4Q9H2B2 425 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 KCNN2Q9H2S1 579 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 MMADHCQ9H3L0 296 aaPredicted RBP12.81□□□□□ -0.36
USP4-212ENST00000486549 CXorf56Q9H5V9 222 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 YY1AP1Q9H869 796 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 SIAEQ9HAT2 523 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 CDH10Q9Y6N8 788 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 MED13LQ71F56 2210 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 ARID1AO14497 2285 aa12.81□□□□□ -0.36
USP4-212ENST00000486549 USF3Q68DE3 2245 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 E2F6O75461 281 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 CIB2O75838 187 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 ZNF14P17017 642 aaPredicted RBP12.8□□□□□ -0.36
USP4-212ENST00000486549 HOXB6P17509 224 aaKnown RBP12.8□□□□□ -0.36
USP4-212ENST00000486549 NPR2P20594 1047 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 NOS3P29474 1203 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 TTKP33981 857 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 CDKN1AP38936 164 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 GUCA1AP43080 201 aaPredicted RBP12.8□□□□□ -0.36
USP4-212ENST00000486549 ADAM8P78325 824 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 ETFDHQ16134 617 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 NRN1LQ496H8 165 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 AGAP6Q5VW22 663 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 LEG1Q6P5S2 330 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 TMEM179BQ7Z7N9 219 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 ADCK1Q86TW2 530 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 MUC15Q8N387 334 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 GIPC3Q8TF64 312 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 IGFBPL1Q8WX77 278 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 SLCO4A1Q96BD0 722 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 ZNF75AQ96N20 296 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 TRAF4Q9BUZ4 470 aaPredicted RBP12.8□□□□□ -0.36
USP4-212ENST00000486549 PLA2G12AQ9BZM1 189 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 CCNB1IP1Q9NPC3 277 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 TBC1D23Q9NUY8 699 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 ITPR3Q14573 2671 aa12.8□□□□□ -0.36
USP4-212ENST00000486549 FAM171A2A8MVW0 826 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 EBAG9O00559 213 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 SLC16A7O60669 478 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 TIPRLO75663 272 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 SOX14O95416 240 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 TXNDC12O95881 172 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 IGFBP1P08833 259 aaPredicted RBP12.79□□□□□ -0.36
USP4-212ENST00000486549 APEHP13798 732 aaKnown RBP12.79□□□□□ -0.36
USP4-212ENST00000486549 CTLA4P16410 223 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 LAP3P28838 519 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 CDKN2AP42771 156 aaKnown RBP12.79□□□□□ -0.36
USP4-212ENST00000486549 PTH2RP49190 550 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 CENPAP49450 140 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 NKX6-1P78426 367 aaPredicted RBP12.79□□□□□ -0.36
USP4-212ENST00000486549 HSF2Q03933 536 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 SLC35F1Q5T1Q4 408 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 KRT80Q6KB66 452 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 RPL13AP3Q6NVV1 102 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 ZNF544Q6NX49 715 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 RASSF6Q6ZTQ3 369 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 DPPA2Q7Z7J5 298 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 ZNF584Q8IVC4 421 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 HS3ST5Q8IZT8 346 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 OR4F15Q8NGB8 312 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 OR8D4Q8NGM9 314 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 OR4K13Q8NH42 304 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 NIPSNAP1Q9BPW8 284 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 DGCR6LQ9BY27 220 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 EMC7Q9NPA0 242 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 VSX1Q9NZR4 365 aaPredicted RBP12.79□□□□□ -0.36
USP4-212ENST00000486549 PDP1Q9P0J1 537 aaPredicted RBP12.79□□□□□ -0.36
USP4-212ENST00000486549 FBXL3Q9UKT7 428 aa12.79□□□□□ -0.36
USP4-212ENST00000486549 ARPC3O15145 178 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 AHCYL1O43865 530 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 KHDRBS3O75525 346 aaKnown RBP12.78□□□□□ -0.36
USP4-212ENST00000486549 RENP00797 406 aa12.78□□□□□ -0.36
USP4-212ENST00000486549 CD8AP01732 235 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms