RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 FAM20BO75063 409 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 PRR23D2P0DMB1 279 aaPredicted RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 FOSL1P15407 271 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 HIST1H1CP16403 213 aaKnown RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 HOXB4P17483 251 aaPredicted RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 CRHBPP24387 322 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 FMO3P31513 532 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.99□□□□□ -0.01
VIM-205ENST00000485947 KRR1Q13601 381 aaKnown RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 ACKR1Q16570 336 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 SLC35F1Q5T1Q4 408 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 TMEM225Q6GV28 225 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 ABLIM2Q6H8Q1 611 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 CXXC5Q7LFL8 322 aaKnown RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 NUFIP2Q7Z417 695 aaKnown RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 ADCK1Q86TW2 530 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 P2RY8Q86VZ1 359 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 UEVLDQ8IX04 471 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 ARIH2OSQ8N7S6 290 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 BPIFB6Q8NFQ5 453 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 KISS1RQ969F8 398 aaPredicted RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 RFKQ969G6 155 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 Q96M85 177 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 TSPAN32Q96QS1 320 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 SF3B5Q9BWJ5 86 aaKnown RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 CCNB1IP1Q9NPC3 277 aa14.99□□□□□ -0.01
VIM-205ENST00000485947 ZNF346Q9UL40 294 aaKnown RBP14.99□□□□□ -0.01
VIM-205ENST00000485947 A6NIZ1 184 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 PRODHO43272 600 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 ARHGEF9O43307 516 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 ENTPD6O75354 484 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 SLC2A10O95528 541 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 THBDP07204 575 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 CD99P14209 185 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 IL32P24001 234 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 LOXP28300 417 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 RAP1BP61224 184 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 RAP1AP62834 184 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 POU3F1Q03052 451 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 CRMP1Q14194 572 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 ZNF362Q5T0B9 420 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 AADACL4Q5VUY2 407 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 SHEQ5VZ18 495 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 CXorf67Q86X51 503 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 SLC37A3Q8NCC5 494 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 OR52E2Q8NGJ4 325 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 ZNF519Q8TB69 540 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 IPCEF1Q8WWN9 437 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 ZNF582Q96NG8 517 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 HINT3Q9NQE9 182 aaKnown RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 CNOT2Q9NZN8 540 aaKnown RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 H2AFY2Q9P0M6 372 aaPredicted RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 B3GAT1Q9P2W7 334 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 AASSQ9UDR5 926 aa14.98□□□□□ -0.01
VIM-205ENST00000485947 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.98□□□□□ -0.01
VIM-205ENST00000485947 RPL36Q9Y3U8 105 aaKnown RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 PRRC2AP48634 2157 aaKnown RBP14.98□□□□□ -0.01
VIM-205ENST00000485947 ZNF469Q96JG9 3925 aaPredicted RBP14.97□□□□□ -0.01
VIM-205ENST00000485947 XKRYO14609 159 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 MRPS14O60783 128 aaKnown RBP14.97□□□□□ -0.01
VIM-205ENST00000485947 BCL10O95999 233 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 RENP00797 406 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 PIPP12273 146 aaPredicted RBP14.97□□□□□ -0.01
VIM-205ENST00000485947 ZNF43P17038 809 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 TMED1Q13445 227 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 SMN1Q16637 294 aaKnown RBP14.97□□□□□ -0.01
VIM-205ENST00000485947 MESTQ5EB52 335 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 ARMC4Q5T2S8 1044 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 C22orf34Q6ZV56 151 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 SLC35D2Q76EJ3 337 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 CPOQ8IVL8 374 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 ZNF100Q8IYN0 542 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 NPEPL1Q8NDH3 523 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 ZNF540Q8NDQ6 660 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 SDR9C7Q8NEX9 313 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 OR4K13Q8NH42 304 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 RASD2Q96D21 266 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 ZC3HAV1LQ96H79 300 aaKnown RBP14.97□□□□□ -0.01
VIM-205ENST00000485947 TMEM204Q9BSN7 226 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 PARPBPQ9NWS1 579 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 DNAJC27Q9NZQ0 273 aa14.97□□□□□ -0.01
VIM-205ENST00000485947 IGHV3-15A0A0B4J1V0 119 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.96□□□□□ -0.01
VIM-205ENST00000485947 IRGMA1A4Y4 181 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 EFCAB10A6NFE3 127 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 ZNF716A6NP11 495 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 ZNF814B7Z6K7 855 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 TRAF3IP2O43734 574 aaPredicted RBP14.96□□□□□ -0.01
VIM-205ENST00000485947 AHCYL1O43865 530 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 XPNPEP2O43895 674 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 HLA-DOBP13765 273 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 HOXC12P31275 282 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 ACVR1BP36896 505 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 SLC25A1P53007 311 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 CDH11P55287 796 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 C1DQ13901 141 aaKnown RBP14.96□□□□□ -0.01
VIM-205ENST00000485947 ADAM5Q6NVV9 412 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 NIPAL3Q6P499 406 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 PLBD1Q6P4A8 553 aa14.96□□□□□ -0.01
VIM-205ENST00000485947 LEG1Q6P5S2 330 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms