RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 THBDP07204 575 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 T-ENOLP0DO92 83 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 ZNF823P16415 610 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 ZNF23P17027 643 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 MAKP20794 623 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 EDNRAP25101 427 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 SDHAP31040 664 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 ATP5J2P56134 94 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 RAB1AP62820 205 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 GK3PQ14409 553 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 CLEC12AQ5QGZ9 265 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 LEG1Q6P5S2 330 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 SHISA2Q6UWI4 295 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 DPY19L2P2Q6ZN68 376 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 ADCK1Q86TW2 530 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 SLC22A24Q8N4F4 322 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 KBTBD8Q8NFY9 601 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 OR4F15Q8NGB8 312 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 OR10G2Q8NGC3 310 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 OR2AJ1Q8NGZ0 328 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 MAGEE2Q8TD90 523 aaPredicted RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 SMAP2Q8WU79 429 aaPredicted RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 CANT1Q8WVQ1 401 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 LIPHQ8WWY8 451 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 NRGNQ92686 78 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 MCHR2Q969V1 340 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 OR52D1Q9H346 318 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 BEX4Q9NWD9 120 aaPredicted RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 PDP1Q9P0J1 537 aaPredicted RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 IL20RAQ9UHF4 553 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 ENOPH1Q9UHY7 261 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 FBXO9Q9UK97 447 aaPredicted RBP7.03□□□□□ -1.28
USP40-216ENST00000485943 MOKQ9UQ07 419 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 POMPQ9Y244 141 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 SLC25A15Q9Y619 301 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 FKBP7Q9Y680 259 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 CRYBG3Q68DQ2 2970 aa7.03□□□□□ -1.28
USP40-216ENST00000485943 ARPC4-TTLL3A0A0A6YYG9 625 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 A0A1W2PPW3 197 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 NPIPB13A6NJU9 1138 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 DEFB108AA8MXU0 73 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 NPIPB4C9JG80 1138 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 RPL36A-HNRNPH2H7BZ11 118 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 H7C1C5 153 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 FFAR1O14842 300 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 TPD52L2O43399 206 aaKnown RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 SLC16A7O60669 478 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 FKBP6O75344 327 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 LYPD3O95274 346 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 SLC2A10O95528 541 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 HLA-HP01893 362 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 LCKP06239 509 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 PGA4P0DJD7 388 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 PGA3P0DJD8 388 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 CBR1P16152 277 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 ZNF3P17036 446 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 MSR1P21757 451 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 FPR3P25089 353 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 FASP25445 335 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 GDI2P50395 445 aaKnown RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 IST1P53990 364 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 FOXG1P55316 489 aaPredicted RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 LCN6P62502 163 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 MS4A2Q01362 244 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 GLO1Q04760 184 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 SCRN3Q0VDG4 424 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 PPP1R8Q12972 351 aaKnown RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 TSPAN31Q12999 210 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 DAG1Q14118 895 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 RAB35Q15286 201 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 TAF13Q15543 124 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 CARTPTQ16568 116 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 MICAQ29983 383 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 DEFB113Q30KQ7 82 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 SLC36A3Q495N2 470 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 ZNF672Q499Z4 452 aaPredicted RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 KRT80Q6KB66 452 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 PGM2L1Q6PCE3 622 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 Q6ZS46 218 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 NLRC3Q7RTR2 1065 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 MDP1Q86V88 176 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 TSPYL5Q86VY4 417 aaPredicted RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 TMEM123Q8N131 208 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 MUC15Q8N387 334 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 ARIH2OSQ8N7S6 290 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 ZNF611Q8N823 705 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 PROKR2Q8NFJ6 384 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 OR2T33Q8NG76 320 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 OR9Q2Q8NGE9 314 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 SNX33Q8WV41 574 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 BCL2L2Q92843 193 aaPredicted RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 TMEM54Q969K7 222 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 FBXO17Q96EF6 278 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 C7orf34Q96L11 122 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 Q96M85 177 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 TSPAN32Q96QS1 320 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 SH3GL3Q99963 347 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 VRK1Q99986 396 aaPredicted RBP7.02□□□□□ -1.29
USP40-216ENST00000485943 TSSK6Q9BXA6 273 aa7.02□□□□□ -1.29
USP40-216ENST00000485943 NELFAQ9H3P2 528 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms