RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 LRP1BQ9NZR2 4599 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 A0A1W2PRQ8 180 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TCRBV4S1A1TA0A5B7 111 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 MEIOCA2RUB1 952 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 FAM159BA6NKW6 160 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 PRSS47A8MTI9 375 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 STX16-NPEPL1H3BU86 382 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 M0R082 166 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 STX16O14662 325 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 AKAP10O43572 662 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 FSTL3O95633 263 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 OTCP00480 354 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 C1QCP02747 245 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 THY1P04216 161 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 C2P06681 752 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 LIPFP07098 398 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 SNRNP70P08621 437 aaKnown RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 HCKP08631 526 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 FAHP16930 419 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TNFRSF1AP19438 455 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 SSTR1P30872 391 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 HSD17B3P37058 310 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 ECI1P42126 302 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CRATP43155 626 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 HTR3AP46098 478 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 GSTM5P46439 218 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 HTR5AP47898 357 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 GTF2A1P52655 376 aaPredicted RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 BLCAPP62952 87 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 ELF3P78545 371 aaPredicted RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 IL5RAQ01344 420 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TP53BP2Q13625 1128 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 KIAA0040Q15053 153 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TBC1D28Q2M2D7 210 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 C11orf91Q3C1V1 193 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CDONQ4KMG0 1287 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 XKR7Q5GH72 579 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 C1orf140Q5VVS0 124 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TYW3Q6IPR3 259 aaKnown RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 DCDC5Q6ZRR9 648 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 NLRC3Q7RTR2 1065 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 SNX32Q86XE0 403 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 VRK2Q86Y07 508 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 PTOV1Q86YD1 416 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CLEC4FQ8N1N0 589 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 SLC22A24Q8N4F4 322 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TMEM151AQ8N4L1 468 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 FBXO36Q8NEA4 188 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CLHC1Q8NHS4 586 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 ZNF417Q8TAU3 575 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 PNPT1Q8TCS8 783 aaKnown RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 MAGOHBQ96A72 148 aaKnown RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 ZBTB9Q96C00 473 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 ZNF764Q96H86 408 aaPredicted RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 MEGF10Q96KG7 1140 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 POM121L2Q96KW2 1035 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 OXGR1Q96P68 337 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 ZNF587Q96SQ5 575 aaPredicted RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 P2RX4Q99571 388 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CPNE1Q99829 537 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 MED4Q9NPJ6 270 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CYSLTR2Q9NS75 346 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 IL19Q9UHD0 177 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 FBXL3Q9UKT7 428 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 POFUT2Q9Y2G5 429 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 CCL27Q9Y4X3 112 aa3.84□□□□□ -1.79
USP4-209ENST00000475873 TSSC4Q9Y5U2 329 aaPredicted RBP3.84□□□□□ -1.79
USP4-209ENST00000475873 MYCBP2O75592 4640 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 A0A1B0GVI7 797 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TCRBV9S1A1TA0A576 114 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 A6NJY4 79 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 E7ESA3 106 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 MS4A18H0YCH9 400 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 FAAHO00519 579 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TIMM8AO60220 97 aaPredicted RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 TBX19O60806 448 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 STX11O75558 287 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 PAHP00439 452 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 HNRNPCP07910 306 aaKnown RBP eCLIP3.83□□□□□ -1.8
USP4-209ENST00000475873 TPM1P09493 284 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 TFPTP0C1Z6 253 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 CCNOP22674 350 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 STX2P32856 288 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 LIPAP38571 399 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 CCT3P49368 545 aaKnown RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 PPP1CBP62140 327 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 KCNJ10P78508 379 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 C2orf54Q08AI8 447 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 EPS8Q12929 822 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 ZSCAN26Q16670 478 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 LRRC75BQ2VPJ9 315 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 MS4A18Q3C1V0 323 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 PLA1AQ53H76 456 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 CLEC12AQ5QGZ9 265 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 LRFN4Q6PJG9 635 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 CCDC137Q6PK04 289 aaKnown RBP3.83□□□□□ -1.8
USP4-209ENST00000475873 UNQ9370/PRO34162Q6UXP9 181 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 BTN2A1Q7KYR7 527 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 IGFN1Q86VF2 1251 aa3.83□□□□□ -1.8
USP4-209ENST00000475873 MOGAT3Q86VF5 341 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms