RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TOP3AQ13472 1001 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-204ENST00000475218 GKAP1Q5VSY0 366 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-204ENST00000475218 IL17RELQ6ZVW7 336 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 OR51A7Q8NH64 312 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 NSMAFQ92636 917 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 YIPF5Q969M3 257 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 HSH2DQ96JZ2 352 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 HOPXQ9BPY8 73 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-204ENST00000475218 OR51B6Q9H340 312 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 SMURF2Q9HAU4 748 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 AP3M1Q9Y2T2 418 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 SPEF1Q9Y4P9 236 aa12.08□□□□□ -0.48
UPF3A-204ENST00000475218 IGLV3-9A0A075B6K5 115 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 FARS2O95363 451 aaKnown RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 SCG5P05408 212 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 NAT2P11245 290 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF250P15622 560 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 COL8A2P25067 703 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 APEX1P27695 318 aaKnown RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 NUDT2P50583 147 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF84P51523 738 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 RPL27P61353 136 aaKnown RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 GALK2Q01415 458 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 TRAM2Q15035 370 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 SLC36A2Q495M3 483 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 PABPC1L2AQ5JQF8 200 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 FOXL2NBQ6ZUU3 175 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 FAM86B1Q8N7N1 296 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 GEMIN6Q8WXD5 167 aaKnown RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 ACOT11Q8WXI4 607 aaPredicted RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 LZICQ8WZA0 190 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 GTF3AQ92664 365 aaKnown RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 ELAC2Q9BQ52 826 aaKnown RBP12.07□□□□□ -0.48
UPF3A-204ENST00000475218 EFCAB1Q9HAE3 211 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 SIAEQ9HAT2 523 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 FBN3Q75N90 2809 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 LOC100509620A0A075B734 347 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 LOC100289279A0A1B0GTE1 492 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 WNT9BO14905 357 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF32P17041 273 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 WNT5AP41221 380 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 CTXN1P60606 82 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 ALKBH6Q3KRA9 238 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 IQCCQ4KMZ1 466 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 IFI44LQ53G44 452 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 TMEM53Q6P2H8 277 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 DPPA2Q7Z7J5 298 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 C1orf159Q96HA4 380 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 POM121L2Q96KW2 1035 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 SNX18Q96RF0 628 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 FNDC11Q9BVV2 318 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 YY1AP1Q9H869 796 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 RNF121Q9H920 327 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 CHODLQ9H9P2 273 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 DUSP13Q9UII6 198 aa12.07□□□□□ -0.48
UPF3A-204ENST00000475218 HTR3EA5X5Y0 456 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 RP2O75695 350 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 SAGP10523 405 aaPredicted RBP12.06□□□□□ -0.48
UPF3A-204ENST00000475218 DRD4P21917 467 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 MAGEB1P43366 347 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 GPR4P46093 362 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 UCP2P55851 309 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 PSME3P61289 254 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 RPS23P62266 143 aaKnown RBP12.06□□□□□ -0.48
UPF3A-204ENST00000475218 PSG4Q00888 419 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 CD47Q08722 323 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 FAM120AOSQ5T036 256 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 FAM27BQ5VT28 67 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 FAM166AQ6J272 317 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 PODNL1Q6PEZ8 512 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 MBOAT2Q6ZWT7 520 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 HDDC2Q7Z4H3 204 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF101Q8IZC7 436 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 FAM156AQ8NDB6 213 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 ZNF540Q8NDQ6 660 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 AKR7LQ8NHP1 331 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 SLC7A13Q8TCU3 470 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 C7orf34Q96L11 122 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 ALG12Q9BV10 488 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 RACGAP1Q9H0H5 632 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 WNT5BQ9H1J7 359 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 MS4A5Q9H3V2 200 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 NMNAT1Q9HAN9 279 aaPredicted RBP12.06□□□□□ -0.48
UPF3A-204ENST00000475218 ADAM18Q9Y3Q7 739 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 ENPP4Q9Y6X5 453 aa12.06□□□□□ -0.48
UPF3A-204ENST00000475218 EFCAB9A8MZ26 197 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 H7C1C5 153 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 ENTPD5O75356 428 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 ERCC1P07992 297 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-204ENST00000475218 LAP3P28838 519 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 FXYD6P3P58550 94 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 LCN6P62502 163 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 ERVK-25P63136 954 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 ENDOGQ14249 297 aaKnown RBP12.05□□□□□ -0.48
UPF3A-204ENST00000475218 TAF11Q15544 211 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 RGS7BPQ6MZT1 257 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-204ENST00000475218 TMPRSS11FQ6ZWK6 438 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 FAM122BQ7Z309 247 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 OAFQ86UD1 273 aa12.05□□□□□ -0.48
UPF3A-204ENST00000475218 RNF113BQ8IZP6 322 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms