RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ARHGAP25P42331 645 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 GPR12P47775 334 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 RAB13P51153 203 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 LIM2P55344 173 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 RPL23AP62750 156 aaKnown RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 IGLV3-21P80748 117 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 MRPS34P82930 218 aaKnown RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 PLCXD2Q0VAA5 305 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 TAF1AQ15573 450 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 KRTAP20-1Q3LI63 56 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ALG10Q5BKT4 473 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ALG10BQ5I7T1 473 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ENTPD8Q5MY95 495 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 CASC4Q6P4E1 433 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 C10orf99Q6UWK7 81 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ABHD12BQ7Z5M8 362 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 AMIGO2Q86SJ2 522 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 IGFN1Q86VF2 1251 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 LRRC57Q8N9N7 239 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 C17orf47Q8NEP4 570 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 LKAAEAR1Q8TD35 194 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 TRPC4APQ8TEL6 797 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 GRK7Q8WTQ7 553 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 DHX58Q96C10 678 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 EGLN2Q96KS0 407 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 FOPNLQ96NB1 174 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 GPR21Q99679 349 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 FAM234AQ9H0X4 552 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 MMADHCQ9H3L0 296 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 PTGES2Q9H7Z7 377 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ADPRHL2Q9NX46 363 aa3.81□□□□□ -1.8
HMGB1-207ENST00000468384 ARMCX3Q9UH62 379 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-207ENST00000468384 A0A0J9YWU9 116 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 CTAGE15A4D2H0 777 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 H3BSH0 61 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 CCL24O00175 119 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RHODO00212 210 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 FGF17O60258 216 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RSL1D1O76021 490 aaKnown RBP3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RNF8O76064 485 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RGS11O94810 467 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 EPOP01588 193 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 HIST1H2ABP04908 130 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 LCKP06239 509 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 TFPIP10646 304 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 HIST1H2ADP20671 130 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 PAX7P23759 505 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 NTSP30990 170 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 GLRXP35754 106 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 CDH13P55290 713 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 ZP1P60852 638 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RCN2Q14257 317 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF273Q14593 569 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 ITIH4Q14624 930 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 ZMYND11Q15326 602 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 TMED2Q15363 201 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 SNAPC1Q16533 368 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 METTL11BQ5VVY1 283 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 WDR73Q6P4I2 378 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 TEX38Q6PEX7 206 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 PPP1R21Q6ZMI0 780 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 PQLC2Q6ZP29 291 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 CYP4V2Q6ZWL3 525 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-207ENST00000468384 HIST3H2AQ7L7L0 130 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 LINGO2Q7L985 606 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 OR2W3Q7Z3T1 314 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 CTAGE6Q86UF2 777 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 PSTKQ8IV42 348 aaKnown RBP3.8□□□□□ -1.8
HMGB1-207ENST00000468384 DENND6AQ8IWF6 608 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 C7orf57Q8NEG2 295 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 SLC26A10Q8NG04 563 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 WDR34Q96EX3 536 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 PLEKHA8Q96JA3 519 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RTN4RQ9BZR6 473 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 PPIL3Q9H2H8 161 aaKnown RBP3.8□□□□□ -1.8
HMGB1-207ENST00000468384 TAAR3PQ9P1P4 343 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RCOR1Q9UKL0 485 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 APLNQ9ULZ1 77 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 RAP2CQ9Y3L5 183 aa3.8□□□□□ -1.8
HMGB1-207ENST00000468384 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 DSPPQ9NZW4 1301 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 DPPA5A6NC42 116 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 OR6C70A6NIJ9 312 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 CGB1A6NKQ9 187 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 IQCF5A8MTL0 148 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 HSPB6O14558 160 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 ERI3O43414 337 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 OR1I1O60431 355 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 SH3BGRLO75368 114 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 IGKV3-15P01624 115 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 CDH1P12830 882 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 RPS2P15880 293 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 ME2P23368 584 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 MAPK3P27361 379 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 DCTDP32321 178 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 BMXP51813 675 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 BTG1P62324 171 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TUBA1BP68363 451 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TUBA4AP68366 448 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 HMGN5P82970 282 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms