RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 C10orf105Q8TEF2 133 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 PROX1Q92786 737 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 ALKBH3Q96Q83 286 aaPredicted RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 SLC38A2Q96QD8 506 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 KCNS3Q9BQ31 491 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 KATNB1Q9BVA0 655 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 PAIP1Q9H074 479 aaKnown RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 TMBIM4Q9HC24 238 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 A4GALTQ9NPC4 353 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 TMEM160Q9NX00 188 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 CRNNQ9UBG3 495 aaPredicted RBP6.29□□□□□ -1.4
USP54-208ENST00000461520 MOKQ9UQ07 419 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 RCE1Q9Y256 329 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 USH1CQ9Y6N9 552 aa6.29□□□□□ -1.4
USP54-208ENST00000461520 B9A039 149 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 NDUFS8O00217 210 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 POLR3GO15318 223 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 UPK3AO75631 287 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 PDE5AO76074 875 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 TGDSO95455 350 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 LGI1O95970 557 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 IGKV3-15P01624 115 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 CRYAAP02489 173 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 PNMTP11086 282 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 HOXB9P17482 250 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 PPIBP23284 216 aaKnown RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 GTF2E2P29084 291 aaKnown RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 RPS5P46782 204 aaKnown RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 STX1BP61266 288 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 SNRPD2P62316 118 aaKnown RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 EGR4Q05215 589 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 LRIF1Q5T3J3 769 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 C6orf52Q5T4I8 152 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 FAM69AQ5T7M9 428 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 CYB5R2Q6BCY4 276 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 RGS7BPQ6MZT1 257 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 SLC2A7Q6PXP3 512 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 NET1Q7Z628 596 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 DNAJA4Q8WW22 397 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 HTRA1Q92743 480 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 BCL2L2Q92843 193 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 MAL2Q969L2 176 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 SLC25A36Q96CQ1 311 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 FBXO17Q96EF6 278 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 C7orf26Q96N11 449 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 OXGR1Q96P68 337 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 TCF7L1Q9HCS4 588 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 MYOZ1Q9NP98 299 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 TCF7L2Q9NQB0 619 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 CA10Q9NS85 328 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 RPS6KB2Q9UBS0 482 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 FBXO9Q9UK97 447 aaPredicted RBP6.28□□□□□ -1.4
USP54-208ENST00000461520 FKBP7Q9Y680 259 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 GMEB1Q9Y692 573 aa6.28□□□□□ -1.4
USP54-208ENST00000461520 LOC102725191A0A1B0GVB3 256 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 NR5A2O00482 541 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 AIM2O14862 343 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 ZNF432O94892 652 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 IGLV1-44P01699 117 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 CECR9P0C854 216 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 FAM157CP0CG43 387 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 CBR1P16152 277 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 USF1P22415 310 aaPredicted RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 SERPINF1P36955 418 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 PDLIM4P50479 330 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 CLDN17P56750 224 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 SSBP2P81877 361 aaPredicted RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 HOXC5Q00444 222 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 CDK6Q00534 326 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 ROR2Q01974 943 aaKnown RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 NAAAQ02083 359 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 LGALS3BPQ08380 585 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 MFSD13AQ14CX5 517 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 EFNB3Q15768 340 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 ALG10BQ5I7T1 473 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 BEND6Q5SZJ8 279 aaPredicted RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 GCNT6Q5T4J0 391 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 FAM91A1Q658Y4 838 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 REEP3Q6NUK4 255 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 ULK3Q6PHR2 472 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 DHRS4L2Q6PKH6 230 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 LINGO2Q7L985 606 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 KRT73Q86Y46 540 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 FUNDC1Q8IVP5 155 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 CCDC36Q8IYA8 594 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 KDM8Q8N371 416 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 ADPRHL1Q8NDY3 354 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 NUP37Q8NFH4 326 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 OR4F15Q8NGB8 312 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 OR6S1Q8NH40 331 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 TMEM158Q8WZ71 300 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 SLC38A4Q969I6 547 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 R3HDM4Q96D70 268 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 SPDL1Q96EA4 605 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 KTI12Q96EK9 354 aaPredicted RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 CCDC28BQ9BUN5 200 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 QTRT1Q9BXR0 403 aaKnown RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 TMEM38AQ9H6F2 299 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 EVA1AQ9H8M9 152 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 SLC25A37Q9NYZ2 338 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms