RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 SPARCP09486 303 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 SHISA6Q6ZSJ9 500 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 COX15Q7KZN9 410 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.4□□□□□ -0.1
SHQ1-202ENST00000444040 ZNF680Q8NEM1 530 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 SEC22CQ9BRL7 303 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 RP1P56715 2156 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 LAMA1P25391 3075 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 CPAMD8Q8IZJ3 1885 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 ARPC4-TTLL3A0A0A6YYG9 625 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 IGHV3-20A0A0C4DH32 117 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 H7C417 338 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 NDUFB6O95139 128 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 OR6A2O95222 327 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 ADAM8P78325 824 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 MELKQ14680 651 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 COL28A1Q2UY09 1125 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 YOD1Q5VVQ6 348 aaPredicted RBP14.4□□□□□ -0.1
SHQ1-202ENST00000444040 FAM166AQ6J272 317 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 OR2T35Q8NGX2 323 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 RELTQ969Z4 430 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 MED30Q96HR3 178 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 NPAS1Q99742 590 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 MTFP1Q9UDX5 166 aa14.4□□□□□ -0.1
SHQ1-202ENST00000444040 FER1L5A0AVI2 2057 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 GGT3PA6NGU5 568 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 AHSA1O95433 338 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 HLA-DOBP13765 273 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 IL11P20809 199 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 RNF4P78317 190 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 MFGE8Q08431 387 aaPredicted RBP14.39□□□□□ -0.11
SHQ1-202ENST00000444040 IKZF1Q13422 519 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 SLC25A25Q6KCM7 469 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 C16orf47Q6ZP98 133 aaPredicted RBP14.39□□□□□ -0.11
SHQ1-202ENST00000444040 KMT5CQ86Y97 462 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 ABCA7Q8IZY2 2146 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 CITED4Q96RK1 184 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 ABHD6Q9BV23 337 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 SPAG17Q6Q759 2223 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 CIB4A0PJX0 185 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 TTLL8A6PVC2 850 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 OR2T1O43869 369 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 RAD1O60671 282 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF354AO60765 605 aaPredicted RBP14.39□□□□□ -0.11
SHQ1-202ENST00000444040 CPN1P15169 458 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 BCKDHBP21953 392 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 OR3A3P47888 321 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 POU3F4P49335 361 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 MDGA2Q7Z553 956 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 TTC9Q92623 222 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 MESP1Q9BRJ9 268 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 ASXL3Q9C0F0 2248 aa14.39□□□□□ -0.11
SHQ1-202ENST00000444040 SLC17A2O00624 439 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 SLC22A5O76082 557 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 IFNGR1P15260 489 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 ANXA7P20073 488 aaKnown RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 C2orf76Q3KRA6 126 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 OR7E24Q6IFN5 339 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 KCTD18Q6PI47 426 aaPredicted RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 WDR74Q6RFH5 385 aaPredicted RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 KRT77Q7Z794 578 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 KDM8Q8N371 416 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 NXPE2Q96DL1 559 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 NUDT22Q9BRQ3 303 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 COA3Q9Y2R0 106 aaPredicted RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 SPEGQ15772 3267 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 RBBP9O75884 186 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 IL5P05113 134 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 FBXO45P0C2W1 286 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 SLC26A5P58743 744 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 EIF2B1Q14232 305 aaKnown RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 CSRP2Q16527 193 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 OR5M10Q6IEU7 315 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 C5orf46Q6UWT4 87 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 CATSPERDQ86XM0 798 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 SPICQ8N5J4 248 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 APCDD1LQ8NCL9 501 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 ASB5Q8WWX0 329 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 RADILQ96JH8 1075 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 SEMA4CQ9C0C4 833 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 TGIF2Q9GZN2 237 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 TTYH1Q9H313 450 aaPredicted RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 KCNK15Q9H427 330 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF768Q9H5H4 540 aaKnown RBP14.38□□□□□ -0.11
SHQ1-202ENST00000444040 PIPOXQ9P0Z9 390 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 LRP12Q9Y561 859 aa14.38□□□□□ -0.11
SHQ1-202ENST00000444040 MS4A18H0YCH9 400 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 NOS1APO75052 506 aaPredicted RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 SRSF10O75494 262 aaKnown RBP14.37□□□□□ -0.11
SHQ1-202ENST00000444040 KDM4BO94953 1096 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 MPZL1O95297 269 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 SSTR2P30874 369 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 MAP2K6P52564 334 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 MS4A18Q3C1V0 323 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 PCGF3Q3KNV8 242 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 ZNF626Q68DY1 528 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 NDUFAF7Q7L592 441 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 STT3BQ8TCJ2 826 aa14.37□□□□□ -0.11
SHQ1-202ENST00000444040 DNASE2BQ8WZ79 361 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms