RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 KLHL9Q9P2J3 617 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 B3GAT1Q9P2W7 334 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 BLOC1S6Q9UL45 172 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF175Q9Y473 711 aa10.71□□□□□ -0.69
PTPRF-208ENST00000437607 SNTNA6NMZ2 147 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 PRR23D1E9PI22 279 aaPredicted RBP10.7□□□□□ -0.7
PTPRF-208ENST00000437607 C16orf97H3BN30 126 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 CYTIPO60759 359 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 RAMP1O60894 148 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 RENP00797 406 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 PRR23D2P0DMB1 279 aaPredicted RBP10.7□□□□□ -0.7
PTPRF-208ENST00000437607 CD8BP10966 210 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 NR2C1P13056 603 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 HLA-DOBP13765 273 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 HIST1H1CP16403 213 aaKnown RBP10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ACVR1BP36896 505 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 PTH2RP49190 550 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 SNRPGP62308 76 aaKnown RBP10.7□□□□□ -0.7
PTPRF-208ENST00000437607 H3F3AP84243 136 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 RASGEF1BQ0VAM2 473 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 CRMP1Q14194 572 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 MESTQ5EB52 335 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 LEG1Q6P5S2 330 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 C20orf204Q6ZNR8 217 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 KDM8Q8N371 416 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF786Q8N393 782 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 SLC37A3Q8NCC5 494 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 NOXO1Q8NFA2 376 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 OR52E2Q8NGJ4 325 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 OR4K13Q8NH42 304 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF519Q8TB69 540 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 FNDC9Q8TBE3 224 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 TRUB1Q8WWH5 349 aaKnown RBP10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ASB10Q8WXI3 467 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ROBO4Q8WZ75 1007 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 LRR1Q96L50 414 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ADAD1Q96M93 576 aaKnown RBP10.7□□□□□ -0.7
PTPRF-208ENST00000437607 Q96MT0 163 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 GSX2Q9BZM3 304 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 MED29Q9NX70 200 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 DNAJC27Q9NZQ0 273 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 GPR52Q9Y2T5 361 aa10.7□□□□□ -0.7
PTPRF-208ENST00000437607 ANK2Q01484 3957 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 LOC102725191A0A1B0GVB3 256 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 MS4A18H0YCH9 400 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 GPR171O14626 319 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 TLX2O43763 284 aaPredicted RBP10.69□□□□□ -0.7
PTPRF-208ENST00000437607 AQP8O94778 261 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 SLC2A10O95528 541 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 CNOT4O95628 575 aaKnown RBP10.69□□□□□ -0.7
PTPRF-208ENST00000437607 IGHG1P01857 330 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 PAX1P15863 534 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 FMO3P31513 532 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 CHN2P52757 468 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 CDH11P55287 796 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 BIDP55957 195 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 CLDN17P56750 224 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 ISL1P61371 349 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 KRTAP1-1Q07627 177 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 SLC17A1Q14916 467 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 RNPS1Q15287 305 aaKnown RBP10.69□□□□□ -0.7
PTPRF-208ENST00000437607 MS4A18Q3C1V0 323 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 TMEM201Q5SNT2 666 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 LCN1P1Q5VSP4 162 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 MEDAGQ5VYS4 303 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 DNM1P34Q6PK57 102 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 ARIH2OSQ8N7S6 290 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 CYB561A3Q8NBI2 242 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 ABHD3Q8WU67 409 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 SNX18Q96RF0 628 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 HINT3Q9NQE9 182 aaKnown RBP10.69□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF346Q9UL40 294 aaKnown RBP10.69□□□□□ -0.7
PTPRF-208ENST00000437607 RCE1Q9Y256 329 aa10.69□□□□□ -0.7
PTPRF-208ENST00000437607 ZNF726A6NNF4 738 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 H7C1C5 153 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 SLC1A7O00341 560 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 PRODHO43272 600 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 FAM20BO75063 409 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 TNFAIP8O95379 198 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 PLAUP00749 431 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 SLC16A1P53985 500 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 CLRN1P58418 232 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 RPS7P62081 194 aaKnown RBP10.68□□□□□ -0.7
PTPRF-208ENST00000437607 LCN6P62502 163 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 LGALS3BPQ08380 585 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 ITGADQ13349 1161 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 ARMC4Q5T2S8 1044 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 NXNL2Q5VZ03 156 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 GTF2IRD2BQ6EKJ0 949 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 NIPAL3Q6P499 406 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 PLBD1Q6P4A8 553 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 FAM214BQ7L5A3 538 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 GTF2IRD2Q86UP8 949 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 OR9Q1Q8NGQ5 310 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 RHOXF1Q8NHV9 184 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 FBLIM1Q8WUP2 373 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 APH1BQ8WW43 257 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 HDAC2Q92769 488 aaKnown RBP10.68□□□□□ -0.7
PTPRF-208ENST00000437607 RFKQ969G6 155 aa10.68□□□□□ -0.7
PTPRF-208ENST00000437607 NR1H4Q96RI1 486 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms