RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZNF85Q03923 595 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 NPY5RQ15761 445 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF425Q6IV72 752 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR6V1Q8N148 313 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ARSGQ96EG1 525 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 CIB3Q96Q77 187 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 PAAF1Q9BRP4 392 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 SLC46A2Q9BY10 475 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ACPTQ9BZG2 426 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TIMM10BQ9Y5J6 103 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 DNAJC15Q9Y5T4 150 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 SNED1Q8TER0 1413 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 LINC01387J3KSC0 135 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 EIF4E2O60573 245 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 THBS1P07996 1170 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TNFRSF1AP19438 455 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 RPS10P46783 165 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 DEFB103AP81534 67 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TSPAN31Q12999 210 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ACOT6Q3I5F7 207 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 EMC4Q5J8M3 183 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 EDARADDQ8WWZ3 215 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 KISS1RQ969F8 398 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF775Q96BV0 537 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 GRAMD2BQ96HH9 432 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 FOXN4Q96NZ1 517 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 LYSMD1Q96S90 227 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF696Q9H7X3 374 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OSGIN2Q9Y236 505 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 SLC5A6Q9Y289 635 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 CHD5Q8TDI0 1954 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 IDSB3KWA1 339 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TYROBPO43914 113 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 CTNSO60931 367 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 FBXO24O75426 580 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 F11P03951 625 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 CAPNS1P04632 268 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 S100A8P05109 93 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 DOK3Q7L591 496 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MOB1BQ7L9L4 216 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ADGRE4PQ86SQ3 457 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR51A4Q8NGJ6 313 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR6K3Q8NGY3 331 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR8U1Q8NH10 309 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ASB11Q8WXH4 323 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 STACQ99469 402 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 KIR3DX1Q9H7L2 352 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 NOX4Q9NPH5 578 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 PTPRZ1P23471 2315 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM200CA6NKL6 621 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 FAM183AA6NL82 134 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 EFSO43281 561 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ATXN1LP0C7T5 689 aaKnown RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 PRSS56P0CW18 603 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 GCSHP23434 173 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 RFX2P48378 723 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TESK1Q15569 626 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 FCRLAQ7L513 359 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 RAB1BQ9H0U4 201 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 GALNT9Q9HCQ5 603 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM181Q9P2C4 612 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TJP1Q07157 1748 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 MEIS3P2A8K0S8 358 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SOCS6O14544 535 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 GPR37O15354 613 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 KLK10O43240 276 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 OR8G3PP0DMU2 310 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 BMP2P12643 396 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 EN2P19622 333 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 CNR1P21554 472 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 IRS1P35568 1242 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 EMP3P54852 163 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 BAMBIQ13145 260 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 IHHQ14623 411 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 HIST2H3AQ71DI3 136 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TEX29Q8N6K0 151 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 GPR26Q8NDV2 337 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SLC38A5Q8WUX1 472 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SEMA4CQ9C0C4 833 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 IGSF5Q9NSI5 407 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ACOXLQ9NUZ1 547 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 VAPAQ9P0L0 249 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 EXO1Q9UQ84 846 aaKnown RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 MAP1BP46821 2468 aaKnown RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SCN4AP35499 1836 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TRGV10A0A0A0MS01 117 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 FAM166BA8MTA8 275 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 F10P00742 488 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ACKR3P25106 362 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 RFC3P40938 356 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 MAP2K6P52564 334 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 FOXC1Q12948 553 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 LGI3Q8N145 548 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 MAFAQ8NHW3 353 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SLC22A12Q96S37 553 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM208Q9BTX3 173 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 TMPRSS5Q9H3S3 457 aa6.31□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF395Q9H8N7 513 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 SDR39U1Q9NRG7 319 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-204ENST00000423058 PIKFYVEQ9Y2I7 2098 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms