RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PKMYT1Q99640 499 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TAS2R5Q9NYW4 299 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TAAR2Q9P1P5 351 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SLC5A6Q9Y289 635 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TIMM8BQ9Y5J9 83 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TRAV27A0A087WT01 109 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 PRAMEF25A6NGN4 478 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 K7ERQ8 282 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ABCD4O14678 606 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HOXC11O43248 304 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CBX7O95931 251 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR8G3PP0DMU2 310 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CXCL12P48061 93 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 UBE2G1P62253 170 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CTBSQ01459 385 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 RUNX2Q13950 521 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 NNATQ16517 81 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ELFN2Q5R3F8 820 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 C1orf140Q5VVS0 124 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 Q6ZSR9 355 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 LMNTD1Q8N9Z9 388 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR1J1Q8NGS3 322 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 MZB1Q8WU39 189 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TIMD4Q96H15 378 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HHIPL1Q96JK4 782 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 WDFY2Q96P53 400 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ATF6BQ99941 703 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SOX7Q9BT81 388 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ERVMER34-1Q9H9K5 563 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 COQ3Q9NZJ6 369 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 USP22Q9UPT9 525 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TIMM10BQ9Y5J6 103 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 V9GYS6 101 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 A0A0B4J2A0 478 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 NAT2P11245 290 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SNRPBP14678 240 aaKnown RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 PAX6P26367 422 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SDHAP31040 664 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HOXD11P31277 338 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF239Q16600 458 aaKnown RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CLLU1Q5K131 121 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF648Q5T619 568 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF626Q68DY1 528 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 METTL27Q8N6F8 245 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SLC38A9Q8NBW4 561 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR13C9Q8NGT0 318 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR2G3Q8NGZ4 309 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR10J5Q8NHC4 309 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 LRRC15Q8TF66 581 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 BSCL2Q96G97 398 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 RNF2Q99496 336 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SELENOIQ9C0D9 397 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 P2RY12Q9H244 342 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HIF1ANQ9NWT6 349 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 THAP10Q9P2Z0 257 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SHPKQ9UHJ6 478 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SNX11Q9Y5W9 270 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM72A0PK05 275 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 AGPAT2O15120 278 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ORM1P02763 201 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 STAG3L2P0CL84 134 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HOXD9P28356 352 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CCR5P51681 352 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CLDN15P56746 228 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CDK5Q00535 292 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OGFOD3Q6PK18 319 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 H2BFWTQ7Z2G1 175 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SYT9Q86SS6 491 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 GRAMD2AQ8IUY3 354 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ARFGAP1Q8N6T3 406 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 BOLLQ8N9W6 283 aaKnown RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR5M8Q8NGP6 311 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR10Z1Q8NGY1 313 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 MBOAT4Q96T53 435 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 SHARPINQ9H0F6 387 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 OR51I2Q9H344 312 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 ACKR4Q9NPB9 350 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 CHST11Q9NPF2 352 aa5.61□□□□□ -1.51
SCN1A-203ENST00000409050 HEYLQ9NQ87 328 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 MRPS2Q9Y399 296 aaKnown RBP5.61□□□□□ -1.51
SCN1A-203ENST00000409050 TCRBV5S1A1TA0A578 114 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 H3BML4 177 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 PHF1O43189 567 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-203ENST00000409050 FBXO24O75426 580 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 RPS19P39019 145 aaKnown RBP5.6□□□□□ -1.51
SCN1A-203ENST00000409050 MMP15P51511 669 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 EBPQ15125 230 aaKnown RBP5.6□□□□□ -1.51
SCN1A-203ENST00000409050 BATFQ16520 125 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 CLLU1OSQ5K130 101 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 FAHD1Q6P587 224 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 DEGS2Q6QHC5 323 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 ALKAL2Q6UX46 152 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 DBX2Q6ZNG2 339 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 FUNDC1Q8IVP5 155 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 BAP18Q8IXM2 172 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 RNF175Q8N4F7 328 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 MRPL43Q8N983 215 aaKnown RBP5.6□□□□□ -1.51
SCN1A-203ENST00000409050 EXD3Q8N9H8 876 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 BPIFCQ8NFQ6 507 aa5.6□□□□□ -1.51
SCN1A-203ENST00000409050 TTC9Q92623 222 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms