RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FAM205BPQ63HN1 556 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 RGS7BPQ6MZT1 257 aaPredicted RBP18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 PODNL1Q6PEZ8 512 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 TSEN54Q7Z6J9 526 aaKnown RBP18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 MEX3DQ86XN8 651 aaKnown RBP18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 OR51A7Q8NH64 312 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM162AQ96A26 154 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 CMTM5Q96DZ9 223 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 KCTD14Q9BQ13 255 aaPredicted RBP18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 KCNN2Q9H2S1 579 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 DUSP13Q9UII6 198 aa18.63■□□□□ 0.57
CCDC28B-201ENST00000373602 MALRD1Q5VYJ5 2156 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 LOC100289279A0A1B0GTE1 492 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 LILRA1O75019 489 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 IFNA2P01563 188 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 TACSTD2P09758 323 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM157CP0CG43 387 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 NCK1P16333 377 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 PRDX6P30041 224 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 RIN1Q13671 783 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 MAD2L1BPQ15013 274 aaPredicted RBP18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 THEM4Q5T1C6 240 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM166AQ6J272 317 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 TBPL2Q6SJ96 375 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 ZNF730Q6ZMV8 503 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 MBOAT2Q6ZWT7 520 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 OAFQ86UD1 273 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 IGFN1Q86VF2 1251 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 ZNF519Q8TB69 540 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 FNDC8Q8TC99 324 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 NSMAFQ92636 917 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 TSPAN32Q96QS1 320 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 RBP7Q96R05 134 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 LRMDAQ9H2I8 198 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 LPAR3Q9UBY5 353 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 ENPP4Q9Y6X5 453 aa18.62■□□□□ 0.57
CCDC28B-201ENST00000373602 LRP5LA4QPB2 252 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 LYNX1G3V0Z9 82 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 LYNX1P0DP58 116 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 ZNF32P17041 273 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 TCN1P20061 433 aaPredicted RBP18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 APEX1P27695 318 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 RAD52P43351 418 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 HSF2Q03933 536 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 SGCAQ16586 387 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 PABPC1L2AQ5JQF8 200 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 ELFN2Q5R3F8 820 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM27BQ5VT28 67 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 TMPRSS11FQ6ZWK6 438 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 CLDN22Q8N7P3 220 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM156AQ8NDB6 213 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 CPEB3Q8NE35 698 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 OR13C2Q8NGS9 318 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 BEX2Q9BXY8 128 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 BCL2L14Q9BZR8 327 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 ANKRD19PQ9H560 264 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 NMNAT1Q9HAN9 279 aaPredicted RBP18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 CCNB1IP1Q9NPC3 277 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 RPS6KA6Q9UK32 745 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 KCNS2Q9ULS6 477 aa18.61■□□□□ 0.57
CCDC28B-201ENST00000373602 IGLV3-9A0A075B6K5 115 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 A0A1W2PPW3 197 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 A6NIZ1 184 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 HPXP02790 462 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 ZNF250P15622 560 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 IGFBP5P24593 272 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 APLNRP35414 380 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 CHN2P52757 468 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 UCP2P55851 309 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 RAP1BP61224 184 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 ERVS71-1P61550 626 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 RAP1AP62834 184 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 CYP4Z1Q86W10 505 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 HPS1Q92902 700 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 SOX7Q9BT81 388 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 SHARPINQ9H0F6 387 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 OR51B6Q9H340 312 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 SPAG4Q9NPE6 437 aa18.6■□□□□ 0.57
CCDC28B-201ENST00000373602 CDC42EP2O14613 210 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 SNX3O60493 162 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 CLPTM1O96005 669 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 LCKP06239 509 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 NAT2P11245 290 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 GPR4P46093 362 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 SELENOVP59797 346 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 GLYATQ6IB77 296 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 FOXL2NBQ6ZUU3 175 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 CXXC5Q7LFL8 322 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 ARIH2OSQ8N7S6 290 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 SYNPRQ8TBG9 265 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 SLC7A13Q8TCU3 470 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 C11orf40Q8WZ69 217 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 FAM107BQ9H098 131 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 TAAR3PQ9P1P4 343 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 EGFL7Q9UHF1 273 aa18.59■□□□□ 0.57
CCDC28B-201ENST00000373602 CST2P09228 141 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 DRD4P21917 467 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 COL8A2P25067 703 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 STOMP27105 288 aa18.58■□□□□ 0.56
CCDC28B-201ENST00000373602 LAP3P28838 519 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms