RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TXNDC12O95881 172 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ACTBP60709 375 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ACTG1P63261 375 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ATXN7L3Q14CW9 347 aaPredicted RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 MEP1BQ16820 701 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 KLHL26Q53HC5 615 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 EEF1A1P5Q5VTE0 462 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 BOLLQ8N9W6 283 aaKnown RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 CCDC107Q8WV48 283 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 SEH1LQ96EE3 360 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ZNF416Q9BWM5 594 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 BARX1Q9HBU1 254 aaPredicted RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 RENP00797 406 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 PNMTP11086 282 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 TAS2R19P59542 299 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 SKP2Q13309 424 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ZNF169Q14929 603 aaPredicted RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 MANEAQ5SRI9 462 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ATPAF1Q5TC12 328 aaPredicted RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 BPIFCQ8NFQ6 507 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 OR1J4Q8NGS1 313 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 ELSPBP1Q96BH3 223 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 NARS2Q96I59 477 aaKnown RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 POTEKPQ9BYX7 375 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 OR10A5Q9H207 317 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 TCEAL2Q9H3H9 227 aaPredicted RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 TAS2R3Q9NYW6 316 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 MYEF2Q9P2K5 600 aaKnown RBP14.8□□□□□ -0.04
SDC4-201ENST00000372733 CLDN16Q9Y5I7 305 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 F5P12259 2224 aa14.8□□□□□ -0.04
SDC4-201ENST00000372733 PNPP00491 289 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 CSN2P05814 226 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 CELA2BP08218 269 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 CENPAP49450 140 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 POMZP3Q6PJE2 187 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 METTL27Q8N6F8 245 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 AVL9Q8NBF6 648 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 OTOSQ8NHW6 89 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 LIPHQ8WWY8 451 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 NPAS1Q99742 590 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 RPP25Q9BUL9 199 aaKnown RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 ALX4Q9H161 411 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 PRTFDC1Q9NRG1 225 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 CGGBP1Q9UFW8 167 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 PLCL2Q9UPR0 1127 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 C11orf98E9PRG8 122 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 HLA-DQA2P01906 255 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 HOXC4P09017 264 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 RNH1P13489 461 aaKnown RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 ZNF28P17035 718 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 CFPP27918 469 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 MC2RQ01718 297 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 MFGE8Q08431 387 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 DHRS2Q13268 280 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 JMJD6Q6NYC1 403 aaPredicted RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 MED25Q71SY5 747 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 ARHGEF39Q8N4T4 335 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 CLRN3Q8NCR9 226 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 OR5M8Q8NGP6 311 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 TAAR8Q969N4 342 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 RELTQ969Z4 430 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 UPB1Q9UBR1 384 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 TMEM14AQ9Y6G1 99 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 A0A1W2PQF6 199 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 OR5H14A6NHG9 310 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 C17orf51A8MQB3 221 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 NDUFA2O43678 99 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 HPGDP15428 266 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 NTSR1P30989 418 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 STARP49675 285 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 SCGB2B2Q4G0G5 96 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 FNDC7Q5VTL7 733 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 FAM166AQ6J272 317 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 MCATQ8IVS2 390 aaKnown RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 ZNF440Q8IYI8 595 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 SLC37A2Q8TED4 501 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 PCDHB16Q9NRJ7 776 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 TAS2R4Q9NYW5 299 aa14.79□□□□□ -0.04
SDC4-201ENST00000372733 FARSAQ9Y285 508 aaKnown RBP14.79□□□□□ -0.04
SDC4-201ENST00000372733 KIAA0100Q14667 2235 aaKnown RBP14.78□□□□□ -0.04
SDC4-201ENST00000372733 TRANK1O15050 2925 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 PCP4L1A6NKN8 68 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 DOK2O60496 412 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 PLGP00747 810 aaPredicted RBP14.78□□□□□ -0.04
SDC4-201ENST00000372733 HOXB2P14652 356 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 PBX2P40425 430 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.78□□□□□ -0.04
SDC4-201ENST00000372733 ZNF542PQ5EBM4 170 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 OR10K2Q6IF99 312 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 TMEM184AQ6ZMB5 413 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 NDUFAF7Q7L592 441 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 KCNRGQ8N5I3 272 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 FRMD1Q8N878 549 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 ASB13Q8WXK3 278 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 BADQ92934 168 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 SEC22AQ96IW7 307 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 OR8B4Q96RC9 309 aa14.78□□□□□ -0.04
SDC4-201ENST00000372733 GAS2L1Q99501 681 aaPredicted RBP14.78□□□□□ -0.04
SDC4-201ENST00000372733 VRK1Q99986 396 aaPredicted RBP14.78□□□□□ -0.04
SDC4-201ENST00000372733 ZNF471Q9BX82 626 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms