RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CDC20BQ86Y33 519 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ADGRG3Q86Y34 549 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 OR51A2Q8NGJ7 313 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 PHOSPHO2Q8TCD6 241 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 PHYHIPQ92561 330 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 CENPMQ9NSP4 180 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 MTFP1Q9UDX5 166 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 B9D1Q9UPM9 204 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 HIF3AQ9Y2N7 669 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 KCNMB2Q9Y691 235 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 AKAIN1P0CW23 69 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 RPS4XP62701 263 aaKnown RBP10.97□□□□□ -0.65
CLIP3-201ENST00000360535 DEFA5Q01523 94 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 KLHL26Q53HC5 615 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 OLFML2AQ68BL7 652 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 LINC00346Q8IVM7 164 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ABCA7Q8IZY2 2146 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 SPICQ8N5J4 248 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF454Q8N9F8 522 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ACBD4Q8NC06 268 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 CHST4Q8NCG5 386 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 THAP3Q8WTV1 239 aaPredicted RBP10.97□□□□□ -0.65
CLIP3-201ENST00000360535 TMEM185BQ9H7F4 350 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 TAS2R4Q9NYW5 299 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 OR2M5A3KFT3 312 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 RAB3DO95716 219 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 RLN2P04090 185 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 GMFBP60983 142 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 UBE2IP63279 158 aaKnown RBP10.97□□□□□ -0.65
CLIP3-201ENST00000360535 EIF2B5Q13144 721 aaKnown RBP10.97□□□□□ -0.65
CLIP3-201ENST00000360535 PPA2Q9H2U2 334 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 DHDHQ9UQ10 334 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 PLEKHA6Q9Y2H5 1048 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 AUP1Q9Y679 476 aa10.97□□□□□ -0.65
CLIP3-201ENST00000360535 ATP6V1G2-DDX39BF2Z307 99 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF749O43361 778 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 SDC3O75056 442 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 ALOX12BO75342 701 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 ABHD16AO95870 558 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 PNMTP11086 282 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 TAGLNQ01995 201 aaKnown RBP10.96□□□□□ -0.65
CLIP3-201ENST00000360535 MFGE8Q08431 387 aaPredicted RBP10.96□□□□□ -0.65
CLIP3-201ENST00000360535 GK2Q14410 553 aaPredicted RBP10.96□□□□□ -0.65
CLIP3-201ENST00000360535 ARSKQ6UWY0 536 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 GPAT4Q86UL3 456 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 GALNT16Q8N428 558 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 GPR119Q8TDV5 335 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 CASTOR1Q8WTX7 329 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 PMM1Q92871 262 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 DCBLD2Q96PD2 775 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 SLC38A3Q99624 504 aa10.96□□□□□ -0.65
CLIP3-201ENST00000360535 NOP16Q9Y3C1 178 aaKnown RBP10.96□□□□□ -0.65
CLIP3-201ENST00000360535 TMEM235A6NFC5 223 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM212A6NML5 194 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 SOX1O00570 391 aaPredicted RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 LMX1BO60663 402 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 OPN1LWP04000 364 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 PPP3CBP16298 524 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 IL12BP29460 328 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 MRPS10P82664 201 aaKnown RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 CORO6Q6QEF8 472 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 C16orf47Q6ZP98 133 aaPredicted RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 KCTD20Q7Z5Y7 419 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM151BQ8IW70 566 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TOE1Q96GM8 510 aaKnown RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 C4orf45Q96LM5 186 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 GPR160Q9UJ42 338 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM272A0A1B0GTI8 110 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TNFRSF10CO14798 259 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 HOXD4P09016 255 aaPredicted RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 CSF1P09603 554 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 CPN1P15169 458 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 PRKACAP17612 351 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 SKP2Q13309 424 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 EIF2B1Q14232 305 aaKnown RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 ACKR1Q16570 336 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 C1orf189Q5VU69 101 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 ANKRD16Q6P6B7 361 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF546Q86UE3 836 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF595Q8IYB9 648 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 BEST3Q8N1M1 668 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF615Q8N8J6 731 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 CMBLQ96DG6 245 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 SLC25A44Q96H78 314 aaPredicted RBP10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TPSD1Q9BZJ3 242 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 TBL1XR1Q9BZK7 514 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 EMC3Q9P0I2 261 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 EMC9Q9Y3B6 208 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 ETV7Q9Y603 341 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 RNF215Q9Y6U7 377 aa10.96□□□□□ -0.66
CLIP3-201ENST00000360535 PHF3Q92576 2039 aaKnown RBP10.95□□□□□ -0.66
CLIP3-201ENST00000360535 SNRPGP15A8MWD9 76 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 ASAH2BP0C7U1 165 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 GABRA1P14867 456 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 GABRG2P18507 467 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 CD1CP29017 333 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 DNASE1L1P49184 302 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 SKP1P63208 163 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF117Q03924 483 aa10.95□□□□□ -0.66
CLIP3-201ENST00000360535 IL10RAQ13651 578 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms