RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MAP2K4P45985 399 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 P2RY4P51582 365 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 TDGF1P3P51864 188 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 HIKESHIQ53FT3 197 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 KRTCAP3Q53RY4 240 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 KLHL24Q6TFL4 600 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 BTLAQ7Z6A9 289 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 DEPDC4Q8N2C3 294 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 ZNF610Q8N9Z0 462 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 NPEPL1Q8NDH3 523 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 RNF128Q8TEB7 428 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 APH1BQ8WW43 257 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 ASB10Q8WXI3 467 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 MCHR2Q969V1 340 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 SLC25A44Q96H78 314 aaPredicted RBP8.15□□□□□ -1.11
USP4-202ENST00000351842 ZNF582Q96NG8 517 aaPredicted RBP8.15□□□□□ -1.11
USP4-202ENST00000351842 ALG12Q9BV10 488 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 PRRG3Q9BZD7 231 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 EVA1AQ9H8M9 152 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 CMC2Q9NRP2 79 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 ERVK-18Q9QC07 812 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 PRELID1Q9Y255 219 aa8.15□□□□□ -1.11
USP4-202ENST00000351842 ZNF716A6NP11 495 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 HLA-HP01893 362 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 LAP3P28838 519 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 H3F3AP84243 136 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ST3GAL4Q11206 333 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 C5orf46Q6UWT4 87 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 SEM1Q6ZVN7 128 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 FAM122BQ7Z309 247 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 POMGNT2Q8NAT1 580 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 FAM57AQ8TBR7 257 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 TMEM163Q8TC26 289 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ISOC1Q96CN7 298 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 TTYH2Q9BSA4 534 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 COPS4Q9BT78 406 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ASH2LQ9UBL3 628 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 TUBD1Q9UJT1 453 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 EMC9Q9Y3B6 208 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 SLC22A23A1A5C7 686 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 A1L4Q6 167 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 NKX2-6A6NCS4 301 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ARRDC5A6NEK1 342 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 BOLA2-SMG1P6H3BVE0 249 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 AGTR1P30556 359 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 MTNR1AP48039 350 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 PRKXP51817 358 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 CXCR4P61073 352 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ZNF91Q05481 1191 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 C6orf141Q5SZD1 244 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 C1orf185Q5T7R7 199 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 OR2G6Q5TZ20 316 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 LRFN4Q6PJG9 635 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ZNF813Q6ZN06 617 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 OR10H5Q8NGA6 315 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 OR2M2Q96R28 347 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 TBCCD1Q9NVR7 557 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 EMC3Q9P0I2 261 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 CLEC2DQ9UHP7 191 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 RASD1Q9Y272 281 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 ETV2O00321 342 aaPredicted RBP8.14□□□□□ -1.11
USP4-202ENST00000351842 SLC1A7O00341 560 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 SLC43A1O75387 559 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 AGFG2O95081 481 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 TSPAN19P0C672 248 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 SFTPCP11686 197 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 CPN1P15169 458 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 CD79BP40259 229 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 CLK1P49759 484 aaKnown RBP8.14□□□□□ -1.11
USP4-202ENST00000351842 FAM27E3Q08E93 113 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 MED22Q15528 200 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 SOWAHCQ53LP3 525 aaPredicted RBP8.14□□□□□ -1.11
USP4-202ENST00000351842 ARMC4Q5T2S8 1044 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 RPL13AP3Q6NVV1 102 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 FAM26EQ8N5C1 309 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 LRRC75AQ8NAA5 344 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 FBLIM1Q8WUP2 373 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 RNF121Q9H920 327 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 SCN3BQ9NY72 215 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 GLTPQ9NZD2 209 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 KCNG2Q9UJ96 466 aa8.14□□□□□ -1.11
USP4-202ENST00000351842 CSMD1Q96PZ7 3565 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 SLC16A6O15403 523 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 CYTIPO60759 359 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 ZNF823P16415 610 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 MAP2K6P52564 334 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 LINGO2Q7L985 606 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 NOXO1Q8NFA2 376 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 RHOXF1Q8NHV9 184 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 TEAD3Q99594 435 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 SLCO5A1Q9H2Y9 848 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 A0A0G2JNJ9 132 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 CCDC160A6NGH7 325 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 C12orf71A8MTZ7 269 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 LINC01387J3KSC0 135 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 GLI4P10075 376 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 PSMB10P40306 273 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 ARF1P84077 181 aaKnown RBP8.13□□□□□ -1.11
USP4-202ENST00000351842 TP53I3Q53FA7 332 aa8.13□□□□□ -1.11
USP4-202ENST00000351842 C12orf73Q69YU5 71 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms