RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 GGNQ86UU5 652 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 ASB17Q8WXJ9 295 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 RNF166Q96A37 237 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-202ENST00000339872 PPIL3Q9H2H8 161 aaKnown RBP11.93□□□□□ -0.5
HMGB1-202ENST00000339872 OCEL1Q9H607 264 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 PLEKHB1Q9UF11 243 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-202ENST00000339872 PROB1E7EW31 1015 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 NPIPA2E9PIF3 369 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 NPIPA3F8WFD2 350 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 MTNR1BP49286 362 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 STARP49675 285 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 HBMQ6B0K9 141 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 SPATC1Q76KD6 591 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 GLB1L2Q8IW92 636 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 CEP19Q96LK0 163 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 OR8B4Q96RC9 309 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 PALMDQ9NP74 551 aa11.93□□□□□ -0.5
HMGB1-202ENST00000339872 A0A1W2PPL8 197 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 FAM166BA8MTA8 275 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 GPRIN2O60269 458 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 VAMP5O95183 116 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 CD1AP06126 327 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 WT1P19544 449 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ENPP1P22413 925 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 MYL9P24844 172 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 MRPL28Q13084 256 aaKnown RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ZMAT1Q5H9K5 638 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ESPNLQ6ZVH7 1005 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 GALNTL5Q7Z4T8 443 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 LINC00346Q8IVM7 164 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 MDS2Q8NDY4 140 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 RPS4Y2Q8TD47 263 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 HAVCR2Q8TDQ0 301 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 SMAD5Q99717 465 aaKnown RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ABHD6Q9BV23 337 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 TTTY12Q9BZ98 90 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 QPCTLQ9NXS2 382 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 CELSR3Q9NYQ7 3312 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 A0A087WV48 116 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 A0A1B0GVG6 124 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 A0A1W2PPK0 400 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 SMAD9O15198 467 aaKnown RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 NME2P1O60361 137 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ZFPL1O95159 310 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 WNT11O96014 354 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 SP1P08047 785 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 CELA3AP09093 270 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 NME2P22392 152 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 SUCLG1P53597 346 aaKnown RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 GFRA1P56159 465 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 CARD18P57730 90 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 RAC3P60763 192 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 RPS11P62280 158 aaKnown RBP eCLIP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 PLGLB1Q02325 96 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ALKBH1Q13686 389 aaKnown RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 KCTD18Q6PI47 426 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 CREB3L2Q70SY1 520 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 KRT77Q7Z794 578 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 EGFL6Q8IUX8 553 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 LAX1Q8IWV1 398 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF454Q8N9F8 522 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 OR9K2Q8NGE7 335 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 FNDC8Q8TC99 324 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 AP3S1Q92572 193 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 OR14A2Q96R54 314 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 MROQ9BYG7 248 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 ELOVL3Q9HB03 270 aa11.92□□□□□ -0.5
HMGB1-202ENST00000339872 KLF13Q9Y2Y9 288 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-202ENST00000339872 A0A1B0GTH9 108 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 DNPH1O43598 174 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CXCL13O43927 109 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 MAGEA5P43359 124 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 EIF1AXP47813 144 aaKnown RBP11.91□□□□□ -0.5
HMGB1-202ENST00000339872 AGFG1P52594 562 aaKnown RBP11.91□□□□□ -0.5
HMGB1-202ENST00000339872 ARG2P78540 354 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 MFAP5Q13361 173 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 POU4F3Q15319 338 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 SPANXN2Q5MJ10 180 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 SLC25A25Q6KCM7 469 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 SNX29P2Q8IUI4 249 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF679Q8IYX0 411 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR10H5Q8NGA6 315 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR52N5Q8NH56 324 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR5AK2Q8NH90 309 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR2V1Q8NHB1 315 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 C11orf40Q8WZ69 217 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF385AQ96PM9 386 aaKnown RBP11.91□□□□□ -0.5
HMGB1-202ENST00000339872 RNF32Q9H0A6 362 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.91□□□□□ -0.5
HMGB1-202ENST00000339872 FRRS1LQ9P0K9 344 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 KLHL9Q9P2J3 617 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF281Q9Y2X9 895 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CMAHPQ9Y471 501 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 HSPB2A8KAH6 182 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 TAF4O00268 1085 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 TLX3O43711 291 aaPredicted RBP11.91□□□□□ -0.5
HMGB1-202ENST00000339872 HRGP04196 525 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 HPNP05981 417 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CD46P15529 392 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 LAP3P28838 519 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms