RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TCTE1Q5JU00 501 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 PHF19Q5T6S3 580 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 RTL6Q6ICC9 239 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 OR4K15Q8NH41 348 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 OR5K2Q8NHB8 316 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 PHOSPHO1Q8TCT1 267 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 MS4A4EQ96PG1 132 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 MS4A8Q9BY19 250 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 CMC2Q9NRP2 79 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 TMEM30AQ9NV96 361 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 ABI3Q9P2A4 366 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 NDRG2Q9UN36 371 aaKnown RBP5.9□□□□□ -1.46
VPS35-201ENST00000299138 A0A0D9SEW6 157 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 UMAD1C9J7I0 102 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 PEX12O00623 359 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 NME2P1O60361 137 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 KLK1P06870 262 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 CD1CP29017 333 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 THBS2P35442 1172 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 OPRD1P41143 372 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 ITPRIPL2Q3MIP1 535 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 C5orf46Q6UWT4 87 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 LURAP1LQ8IV03 231 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 SULF2Q8IWU5 870 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 CFAP52Q8N1V2 620 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 OR6K3Q8NGY3 331 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 USB1Q9BQ65 265 aaKnown RBP5.9□□□□□ -1.46
VPS35-201ENST00000299138 HES4Q9HCC6 221 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 MSL2Q9HCI7 577 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 PLEKHJ1Q9NW61 149 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 CA14Q9ULX7 337 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 ANHXE9PGG2 379 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 TUSC1Q2TAM9 212 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 TSSK4Q6SA08 328 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 SEZ6L2Q6UXD5 910 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 LMNTD1Q8N9Z9 388 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 OR13G1Q8NGZ3 307 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 OR2T4Q8NH00 348 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 MRGPRX3Q96LB0 322 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 ZNF558Q96NG5 402 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 CTDSP1Q9GZU7 261 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 R3HDMLQ9H3Y0 253 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 UCK1Q9HA47 277 aa5.9□□□□□ -1.46
VPS35-201ENST00000299138 SF3B6Q9Y3B4 125 aaKnown RBP5.9□□□□□ -1.46
VPS35-201ENST00000299138 PLXNA1Q9UIW2 1896 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 RFPL4AA6NLU0 287 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 ZNF724A8MTY0 619 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 VSTM5A8MXK1 200 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 C17orf112F2Z3M2 114 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 RFPL4AL1F8VTS6 287 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 LATO43561 262 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 SYPP08247 313 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 GABRR2P28476 465 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 RGRP47804 291 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 TAS2R60P59551 318 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 PRPS1P60891 318 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 TBPL1P62380 186 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 RPS25P62851 125 aaKnown RBP5.9□□□□□ -1.47
VPS35-201ENST00000299138 DPTQ07507 201 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 GLDNQ6ZMI3 551 aaPredicted RBP5.9□□□□□ -1.47
VPS35-201ENST00000299138 KCNRGQ8N5I3 272 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 CDRT4Q8N9R6 151 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 CD99L2Q8TCZ2 262 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 DUSP19Q8WTR2 217 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 KCNK17Q96T54 332 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 PRRT1Q99946 306 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 SLC25A18Q9H1K4 315 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 ZCCHC4Q9H5U6 513 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 PPP1R3CQ9UQK1 317 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 OR51B4Q9Y5P0 310 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 D6RAR5 112 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 COCHO43405 550 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 NUDT21O43809 227 aaKnown RBP5.9□□□□□ -1.47
VPS35-201ENST00000299138 FZD7O75084 574 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 SOD2P04179 222 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 SERPINA5P05154 406 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 GABRR1P24046 479 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 RBP2P50120 134 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 KLRB1Q12918 225 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 C17orf99Q6UX52 265 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 VITQ6UXI7 678 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 NLGN4XQ8N0W4 816 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 OR5W2Q8NH69 310 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 SFT2D1Q8WV19 159 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 IL1F10Q8WWZ1 152 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 AKR1E2Q96JD6 320 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 EGLN2Q96KS0 407 aa5.9□□□□□ -1.47
VPS35-201ENST00000299138 RPL10LQ96L21 214 aaKnown RBP5.9□□□□□ -1.47
VPS35-201ENST00000299138 PHPT1Q9NRX4 125 aaPredicted RBP5.9□□□□□ -1.47
VPS35-201ENST00000299138 TAAR5O14804 337 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OR2A4O95047 310 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 C8orf89P0DMQ9 161 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 MMP11P24347 488 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 PSMB10P40306 273 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 NAAAQ02083 359 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 P2RY14Q15391 338 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TMEM183BQ1AE95 376 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 SCGB1D4Q6XE38 83 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 OTOP2Q7RTS6 562 aa5.89□□□□□ -1.47
VPS35-201ENST00000299138 TMEM173Q86WV6 379 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms