RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PLK3Q9H4B4 646 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 VDAC3Q9Y277 283 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 A0A1W2PQU0 124 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 TACR1P25103 407 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 CLDN12P56749 244 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 IAH1Q2TAA2 248 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF768Q9H5H4 540 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 FTSJ1Q9UET6 329 aa9.11□□□□□ -0.95
COL6A3-201ENST00000295550 NDRG4Q9ULP0 352 aaKnown RBP9.11□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF891A8MT65 544 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TCAPO15273 167 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ENSAO43768 121 aaKnown RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 PTTG1IPP53801 180 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ENTPD8Q5MY95 495 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 OR2G6Q5TZ20 316 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 CATSPERDQ86XM0 798 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 RNF175Q8N4F7 328 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 LMNTD1Q8N9Z9 388 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 EGLN2Q96KS0 407 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 MCTS1Q9ULC4 181 aaKnown RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ACOD1A6NK06 481 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 MAOBP27338 520 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 HSF5Q4G112 596 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 LRRTM1Q86UE6 522 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 C1orf198Q9H425 327 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 H2AFB1P0C5Y9 115 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 NAGAP17050 411 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 HIST1H1TP22492 207 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 EMP3P54852 163 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TEKQ02763 1124 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF90Q03938 601 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SLCO4C1Q6ZQN7 724 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 METTL9Q9H1A3 318 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ALX3O95076 343 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TCRBP04435 133 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TGFBR3Q03167 851 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SERTAD2Q14140 314 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 OR1Q1Q15612 314 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 LRRC26Q2I0M4 334 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TMEM88Q6PEY1 159 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 BTNL8Q6UX41 500 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 KCNG3Q8TAE7 436 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 CABLES2Q9BTV7 478 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 OR52D1Q9H346 318 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 CSAG2Q9Y5P2 127 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF133P52736 654 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 HSD17B7P56937 341 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 LTB4RQ15722 352 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ADAM5Q6NVV9 412 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 LIPIQ6XZB0 460 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 LYSMD2Q8IV50 215 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TSACCQ96A04 125 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SLC41A2Q96JW4 573 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 C19orf43Q9BQ61 176 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SLC17A9Q9BYT1 436 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 KDM4EB2RXH2 506 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 H7BYZ3 331 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 POU3F2P20265 443 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SIM1P81133 766 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 REEP5Q00765 189 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF684Q5T5D7 378 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF852Q6ZMS4 543 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ANKRD53Q8N9V6 530 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 DCAF16Q9NXF7 216 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 CLDND1Q9NY35 253 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 CACNA1EQ15878 2313 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 J3KTA2 159 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 DCTN6O00399 190 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 CT45A10P0DMU9 189 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 PTBP1P26599 531 aaKnown RBP eCLIP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 RAC1P63000 192 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 COL9A2Q14055 689 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-201ENST00000295550 MKXQ8IYA7 352 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 PRR22Q8IZ63 422 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 ACOT4Q8N9L9 421 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 MARCH5Q9NX47 278 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 A0A0A6YYJ9 748 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SGK494L7N484 410 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 NAT1P18440 290 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 MPPED2Q15777 294 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 SLC35G3Q8N808 338 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 PIGCQ92535 297 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 TNFRSF12AQ9NP84 129 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 PTPRFP10586 1907 aa9.1□□□□□ -0.95
COL6A3-201ENST00000295550 AQP7O14520 342 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 GPRIN2O60269 458 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 HMGN2P05204 90 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 UBE2G1P62253 170 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 LTC4SQ16873 150 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 RPL7L1Q6DKI1 246 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 NLRC3Q7RTR2 1065 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 SLC35B4Q969S0 331 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ALG12Q9BV10 488 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ALOXE3Q9BYJ1 711 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 IL23AQ9NPF7 189 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ZNF355PQ9NSJ1 428 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 NECAP2Q9NVZ3 263 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 ARRDC5A6NEK1 342 aa9.09□□□□□ -0.95
COL6A3-201ENST00000295550 CSO75390 466 aaKnown RBP9.09□□□□□ -0.95
COL6A3-201ENST00000295550 DTYMKP23919 212 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms