RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ADGRE4PQ86SQ3 457 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 ABHD4Q8TB40 342 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 GPR119Q8TDV5 335 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 FGF11Q92914 225 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 RIMS4Q9H426 269 aaPredicted RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 SLC22A11Q9NSA0 550 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 VNN3Q9NY84 501 aa12.38□□□□□ -0.43
LDLR-201ENST00000252444 EXO1Q9UQ84 846 aaKnown RBP12.38□□□□□ -0.43
LDLR-201ENST00000252444 TMEM72A0PK05 275 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 ZNF850A8MQ14 1090 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 FOXS1O43638 330 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 TSC22D2O75157 780 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 QDPRP09417 244 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 HTR2CP28335 458 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 SNTB2Q13425 540 aaKnown RBP12.37□□□□□ -0.43
LDLR-201ENST00000252444 ASB5Q8WWX0 329 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 DUSP21Q9H596 190 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 RLIMQ9NVW2 624 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 PLEKHJ1Q9NW61 149 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 ZNF175Q9Y473 711 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 NUMA1Q14980 2115 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 ZNF354AO60765 605 aaPredicted RBP12.37□□□□□ -0.43
LDLR-201ENST00000252444 ALDH3B2P48448 385 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 GNMTQ14749 295 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 SHBQ15464 509 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 OR52N5Q8NH56 324 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 SLCO4A1Q96BD0 722 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 PTTG3PQ9NZH4 202 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 PRELID3BQ9Y3B1 194 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 CDNFQ49AH0 187 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 METTL11BQ5VVY1 283 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 OR5T2Q8NGG2 359 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 Q96M85 177 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 TRIB1Q96RU8 372 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 PAPOLGQ9BWT3 736 aaKnown RBP12.37□□□□□ -0.43
LDLR-201ENST00000252444 MARCH7Q9H992 704 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 ZNF69Q9UC07 566 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 FOXJ3Q9UPW0 622 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 TPPPO94811 219 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 PRSS23O95084 383 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 SLC2A5P22732 501 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 THBS4P35443 961 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 CX3CR1P49238 355 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 CDK5Q00535 292 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 OR4F15Q8NGB8 312 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 OR6X1Q8NH79 312 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 HAO2Q9NYQ3 351 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 B3GALT1Q9Y5Z6 326 aa12.37□□□□□ -0.43
LDLR-201ENST00000252444 BORCS7-ASMTA0A0B4J1R7 106 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 CREBL2O60519 120 aaPredicted RBP12.36□□□□□ -0.43
LDLR-201ENST00000252444 SLC35A2P78381 396 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 DOC2BQ14184 412 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 ELFN2Q5R3F8 820 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 FAM198BQ6UWH4 519 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 GFRALQ6UXV0 394 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 Q8IYB0 196 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 APOBEC3DQ96AK3 386 aaPredicted RBP12.36□□□□□ -0.43
LDLR-201ENST00000252444 SLAMF6Q96DU3 332 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 AIFM2Q9BRQ8 373 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 NDUFB11Q9NX14 153 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 CEPT1Q9Y6K0 416 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 TRIM64BA6NI03 449 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 AQP8O94778 261 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 CLN3Q13286 438 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 COL19A1Q14993 1142 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 SLC25A45Q8N413 288 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 IL20RAQ9UHF4 553 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 LOC100289279A0A1B0GTE1 492 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 CXCL13O43927 109 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 ALDOBP05062 364 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 ZP4Q12836 540 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 SOWAHCQ53LP3 525 aaPredicted RBP12.36□□□□□ -0.43
LDLR-201ENST00000252444 DCXRQ7Z4W1 244 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 RASL10BQ96S79 203 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 IKZF5Q9H5V7 419 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 COA3Q9Y2R0 106 aaPredicted RBP12.36□□□□□ -0.43
LDLR-201ENST00000252444 PRSS44E7EML9 344 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 TBPP20226 339 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 RGS19P49795 217 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 LTBQ06643 244 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 FXNQ16595 210 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 MEP1BQ16820 701 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 NKPD1Q17RQ9 610 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 RNF128Q8TEB7 428 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 ZNF721Q8TF20 911 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 PTPMT1Q8WUK0 201 aaPredicted RBP12.36□□□□□ -0.43
LDLR-201ENST00000252444 VWCEQ96DN2 955 aa12.36□□□□□ -0.43
LDLR-201ENST00000252444 EEF1E1O43324 174 aaKnown RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 IFNA7P01567 189 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 CRYAAP02489 173 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 ZNF573Q86YE8 665 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 SYNPRQ8TBG9 265 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 PP6455Q8WZ26 134 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 MCRIP1C9JLW8 97 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 K7ESF4 209 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 APOL3O95236 402 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 HOXB1P14653 301 aaPredicted RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 ERVK-16P61578 105 aa12.35□□□□□ -0.43
LDLR-201ENST00000252444 SRSF5Q13243 272 aaKnown RBP12.35□□□□□ -0.43
LDLR-201ENST00000252444 DRAM2Q6UX65 266 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms