RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ATPAF1Q5TC12 328 aaPredicted RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 POMZP3Q6PJE2 187 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 KRT77Q7Z794 578 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 BEST3Q8N1M1 668 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 SDR16C5Q8N3Y7 309 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 C12orf45Q8N5I9 185 aaPredicted RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 METTL27Q8N6F8 245 aaPredicted RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 OR4S1Q8NGB4 309 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 OR1J4Q8NGS1 313 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 C15orf40Q8WUR7 153 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ADAT1Q9BUB4 502 aaKnown RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 COMMD4Q9H0A8 199 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ELOVL3Q9HB03 270 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 IL23AQ9NPF7 189 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 TAS2R8Q9NYW2 309 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 GRHPRQ9UBQ7 328 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 CGGBP1Q9UFW8 167 aaPredicted RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 FARSAQ9Y285 508 aaKnown RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 LOC100509620A0A075B734 347 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 TMEM212A6NML5 194 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ZNF735P0CB33 412 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MGMTP16455 207 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 GPR3P46089 330 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MFGE8Q08431 387 aaPredicted RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 DHRS2Q13268 280 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 SQSTM1Q13501 440 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MEP1BQ16820 701 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 KLHL26Q53HC5 615 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 FAM166AQ6J272 317 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MOB3CQ70IA8 216 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ZNF627Q7L945 461 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MCATQ8IVS2 390 aaKnown RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 LINC00518Q8N0U6 118 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ZNF321PQ8N8H1 164 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 CLRN3Q8NCR9 226 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 OR51A2Q8NGJ7 313 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 TAAR8Q969N4 342 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ELSPBP1Q96BH3 223 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 NARS2Q96I59 477 aaKnown RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 DCBLD2Q96PD2 775 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 SLC25A32Q9H2D1 315 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 SFXN1Q9H9B4 322 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 PCDHB16Q9NRJ7 776 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MRPS18BQ9Y676 258 aaKnown RBP11.2□□□□□ -0.62
NUP88-201ENST00000225696 PCNX3Q9H6A9 2034 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 MYO9BQ13459 2157 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 DOCK8Q8NF50 2099 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 LOC100289279A0A1B0GTE1 492 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 RNF222A6NCQ9 220 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 TMEM127O75204 238 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 RAB3DO95716 219 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 PLGP00747 810 aaPredicted RBP11.19□□□□□ -0.62
NUP88-201ENST00000225696 AMY2AP04746 511 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 APODP05090 189 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 ST6GAL1P15907 406 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 MC2RQ01718 297 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 EIF2B5Q13144 721 aaKnown RBP11.19□□□□□ -0.62
NUP88-201ENST00000225696 NFATC4Q14934 902 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 TAF13Q15543 124 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 RAB11BQ15907 218 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 NKPD1Q17RQ9 610 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 TMEM88Q6PEY1 159 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 ARHGEF39Q8N4T4 335 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 OR13C8Q8NGS7 320 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 FAM174AQ8TBP5 190 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 SLC6A7Q99884 636 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 CCDC3Q9BQI4 270 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 PELOQ9BRX2 385 aaKnown RBP11.19□□□□□ -0.62
NUP88-201ENST00000225696 SAV1Q9H4B6 383 aaPredicted RBP11.19□□□□□ -0.62
NUP88-201ENST00000225696 Q9N2J8 555 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 CDV3Q9UKY7 258 aaKnown RBP11.19□□□□□ -0.62
NUP88-201ENST00000225696 YBX2Q9Y2T7 364 aaKnown RBP11.19□□□□□ -0.62
NUP88-201ENST00000225696 FREM3P0C091 2139 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 SEC16AO15027 2179 aa11.19□□□□□ -0.62
NUP88-201ENST00000225696 FITM1A5D6W6 292 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 WIPF3A6NGB9 483 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 C11orf98E9PRG8 122 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 GPR31O00270 319 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SLC17A2O00624 439 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SRPX2O60687 465 aaPredicted RBP11.18□□□□□ -0.62
NUP88-201ENST00000225696 GDI1P31150 447 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 ATP1B3P54709 279 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 ALG11Q2TAA5 492 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SCGB2B2Q4G0G5 96 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 SLC22A6Q4U2R8 563 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 GLYATL3Q5SZD4 288 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 PDSS1Q5T2R2 415 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 EEF1A1P5Q5VTE0 462 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 CORO6Q6QEF8 472 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 MED25Q71SY5 747 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 OR2W3Q7Z3T1 314 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 RTN4RL2Q86UN3 420 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 AVL9Q8NBF6 648 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 TMEM185AQ8NFB2 350 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 PHOSPHO1Q8TCT1 267 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 RSC1A1Q92681 617 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 WDR92Q96MX6 357 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 INTS14Q96SY0 518 aa11.18□□□□□ -0.62
NUP88-201ENST00000225696 VRK1Q99986 396 aaPredicted RBP11.18□□□□□ -0.62
NUP88-201ENST00000225696 OR10A5Q9H207 317 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms