RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 G6PC3Q9BUM1 346 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 LDAHQ9H6V9 325 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 SEC16AO15027 2179 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 MAOBP27338 520 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 GPR3P46089 330 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 GPM6BQ13491 265 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 TAF13Q15543 124 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 TOMM34Q15785 309 aaPredicted RBP12.68□□□□□ -0.38
USH1C-201ENST00000005226 RAB11BQ15907 218 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 KLHL26Q53HC5 615 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 KRT77Q7Z794 578 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 NAXDQ8IW45 347 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 STEAP2Q8NFT2 490 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 OR4S1Q8NGB4 309 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 NKD1Q969G9 470 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 NARS2Q96I59 477 aaKnown RBP12.68□□□□□ -0.38
USH1C-201ENST00000005226 GPX7Q96SL4 187 aaPredicted RBP12.68□□□□□ -0.38
USH1C-201ENST00000005226 INTS14Q96SY0 518 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 MRI1Q9BV20 369 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 PRTFDC1Q9NRG1 225 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 CLDN16Q9Y5I7 305 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 LAMA1P25391 3075 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 CDC14CA4D256 554 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 RAB3DO95716 219 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 AMY2AP04746 511 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 CA3P07451 260 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 TACR3P29371 465 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 AKR1C2P52895 323 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 AKR1C1Q04828 323 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 MFGE8Q08431 387 aaPredicted RBP12.68□□□□□ -0.38
USH1C-201ENST00000005226 MOGAT2Q3SYC2 334 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 Q6ZSR6 202 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 C12orf45Q8N5I9 185 aaPredicted RBP12.68□□□□□ -0.38
USH1C-201ENST00000005226 PXT1Q8NFP0 134 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 OR51A2Q8NGJ7 313 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 ZNF563Q8TA94 476 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 FAM174AQ8TBP5 190 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 WNT2BQ93097 391 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 SEH1LQ96EE3 360 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 DCBLD2Q96PD2 775 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 IFT46Q9NQC8 304 aa12.68□□□□□ -0.38
USH1C-201ENST00000005226 A0A1B0GTQ1 180 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 TMEM82A0PJX8 343 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 FITM1A5D6W6 292 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 DNASE2O00115 360 aaPredicted RBP12.67□□□□□ -0.38
USH1C-201ENST00000005226 ASAH2BP0C7U1 165 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 WBP2NLQ6ICG8 309 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 HSD17B13Q7Z5P4 300 aaPredicted RBP12.67□□□□□ -0.38
USH1C-201ENST00000005226 CD163Q86VB7 1156 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 BEST3Q8N1M1 668 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 OR1J4Q8NGS1 313 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 OR6K3Q8NGY3 331 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 LRRC46Q96FV0 321 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 NRSN2Q9GZP1 204 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 TMEM184BQ9Y519 407 aaPredicted RBP12.67□□□□□ -0.38
USH1C-201ENST00000005226 DOCK8Q8NF50 2099 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 RFPL4AA6NLU0 287 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 TMEM212A6NML5 194 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 RFPL4AL1F8VTS6 287 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 LMX1BO60663 402 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 MPZL1O95297 269 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 SPARCP09486 303 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 PBX2P40425 430 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 LUMP51884 338 aaPredicted RBP12.67□□□□□ -0.38
USH1C-201ENST00000005226 ISXQ2M1V0 245 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 GLYATL3Q5SZD4 288 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 MCATQ8IVS2 390 aaKnown RBP12.67□□□□□ -0.38
USH1C-201ENST00000005226 ZSCAN1Q8NBB4 408 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 BPIFCQ8NFQ6 507 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 C15orf40Q8WUR7 153 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 TAS2R8Q9NYW2 309 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 TAS2R4Q9NYW5 299 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 TAS2R3Q9NYW6 316 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 B9D1Q9UPM9 204 aa12.67□□□□□ -0.38
USH1C-201ENST00000005226 PRAMEF2O60811 474 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 RNH1P13489 461 aaKnown RBP12.66□□□□□ -0.38
USH1C-201ENST00000005226 CHRDL2Q6WN34 429 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 FAM160A2Q8N612 972 aaPredicted RBP12.66□□□□□ -0.38
USH1C-201ENST00000005226 OR13H1Q8NG92 308 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 GPX8Q8TED1 209 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 MRPS18BQ9Y676 258 aaKnown RBP12.66□□□□□ -0.38
USH1C-201ENST00000005226 LOC100289279A0A1B0GTE1 492 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 FAM25EA8MYX2 175 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 SRPX2O60687 465 aaPredicted RBP12.66□□□□□ -0.38
USH1C-201ENST00000005226 RENP00797 406 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 ITGB2P05107 769 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 PRKACAP17612 351 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 PPM1FP49593 454 aaPredicted RBP12.66□□□□□ -0.38
USH1C-201ENST00000005226 SPOCK1Q08629 439 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 ATPAF1Q5TC12 328 aaPredicted RBP12.66□□□□□ -0.38
USH1C-201ENST00000005226 EEF1A1P5Q5VTE0 462 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 MARCH3Q86UD3 253 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 KDM8Q8N371 416 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 HERVK_113Q902F9 699 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 ADOQ96SZ5 270 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 CMKLR1Q99788 373 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 PCNX3Q9H6A9 2034 aa12.66□□□□□ -0.38
USH1C-201ENST00000005226 OR5H14A6NHG9 310 aa12.65□□□□□ -0.38
USH1C-201ENST00000005226 CDC40O60508 579 aaKnown RBP eCLIP12.65□□□□□ -0.38
USH1C-201ENST00000005226 RPA2P15927 270 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms