RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HIST1H2BCP62807 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 RPS26P62854 115 aaKnown RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SRSF3P84103 164 aaKnown RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 PAFAH1B3Q15102 231 aaKnown RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST2H2BEQ16778 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 DCST2Q5T1A1 773 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TNFAIP8L2Q6P589 184 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 METTL7BQ6UX53 244 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 Q6ZSR9 355 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR51F2Q8NH61 342 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 NFKBIDQ8NI38 313 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SYNPRQ8TBG9 265 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BHQ93079 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ECHDC3Q96DC8 303 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 C16orf58Q96GQ5 468 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TBX15Q96SF7 602 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF607Q96SK3 696 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TEAD3Q99594 435 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BNQ99877 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BMQ99879 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 KIR3DX1Q9H7L2 352 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 FGF20Q9NP95 211 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC52A3Q9NQ40 469 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HSPB7Q9UBY9 170 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TIMM10BQ9Y5J6 103 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ARL5AQ9Y689 179 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 LAMB2P55268 1798 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 NINQ8N4C6 2090 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ANKRD36CQ5JPF3 1778 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 MON2Q7Z3U7 1717 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 AHRRA9YTQ3 701 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF354AO60765 605 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC35G6P0C7Q6 338 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 H2BFSP57053 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ERVPABLB-1P60509 514 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 EFNB1P98172 346 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 AMHR2Q16671 573 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SMIM21Q3B7S5 101 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SYT14P1Q58G82 188 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CD300LGQ6UXG3 332 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HEPN1Q6WQI6 88 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 DPY19L2P2Q6ZN68 376 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ESPNLQ6ZVH7 1005 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 NRMQ8IXM6 262 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 KLHDC1Q8N7A1 406 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC26A10Q8NG04 563 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR5AP2Q8NGF4 316 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR1P1Q8NH06 330 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CD99L2Q8TCZ2 262 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HSD17B8Q92506 261 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 EMID1Q96A84 441 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TVP23CQ96ET8 276 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM19Q96HH6 336 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CMKLR1Q99788 373 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 NKX3-1Q99801 234 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC25A21Q9BQT8 299 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 PCGF1Q9BSM1 259 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CABLES2Q9BTV7 478 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 POFUT1Q9H488 388 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 BARX1Q9HBU1 254 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF586Q9NXT0 402 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 NDOR1Q9UHB4 597 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 AMDHD2Q9Y303 409 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 COLEC10Q9Y6Z7 277 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 KDM3BQ7LBC6 1761 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TSPAN11A1L157 253 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 H3BRB1 525 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 FGF16O43320 207 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 KCNAB3O43448 404 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 KCNK5O95279 499 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 KLF8O95600 359 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CYB5AP00167 134 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HPRT1P00492 218 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SEMG1P04279 462 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF286BP0CG31 522 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SOX10P56693 466 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SUMO1P63165 101 aaKnown RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 IL13RA1P78552 427 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC7A9P82251 487 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TLE3Q04726 772 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 UPP1Q16831 310 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CLEC12AQ5QGZ9 265 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 PRPF38BQ5VTL8 546 aaKnown RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 DCAF12L2Q5VW00 463 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR10W1Q8NGF6 305 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR4L1Q8NH43 312 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR51Q1Q8NH59 317 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ARRDC2Q8TBH0 407 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SFXN5Q8TD22 340 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC35F5Q8WV83 523 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 MIEN1Q9BRT3 115 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 SLC23A2Q9UGH3 650 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 MARF1Q9Y4F3 1742 aaKnown RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 DENND4AQ7Z401 1863 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 P2RX6O15547 441 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 XRCC3O43542 346 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 OR7C2O60412 319 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 CLDN11O75508 207 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 GZMBP10144 247 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms