RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SLC25A44Q96H78 314 aaPredicted RBP16.49■□□□□ 0.23
CLN3-262ENST00000637699 ZNF607Q96SK3 696 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 MCHR1Q99705 422 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 GAL3ST1Q99999 423 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 BCL2L14Q9BZR8 327 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 LRMDAQ9H2I8 198 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 C1orf198Q9H425 327 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 TCF7L2Q9NQB0 619 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 TAS2R5Q9NYW4 299 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 TGP01266 2768 aa16.49■□□□□ 0.23
CLN3-262ENST00000637699 IQCMA0A1B0GVH7 501 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 SERPINB7O75635 380 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 SNAP29O95721 258 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 CH25HO95992 272 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 MAKP20794 623 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 GATA3P23771 443 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 SLC6A2P23975 617 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 ZNF81P51508 661 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 PLP2Q04941 152 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 FOXL1Q12952 345 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 MOGQ16653 247 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 TTMPQ5BVD1 217 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 LRIF1Q5T3J3 769 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 SHISA2Q6UWI4 295 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 LINC00114Q6XXX2 140 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 RETREG3Q86VR2 466 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 TREML1Q86YW5 311 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 LRRC17Q8N6Y2 441 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 SMYD1Q8NB12 490 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 RBM15BQ8NDT2 890 aaKnown RBP16.48■□□□□ 0.23
CLN3-262ENST00000637699 OR1J1Q8NGS3 322 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 ATP6V1G3Q96LB4 118 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 NTN4Q9HB63 628 aa16.48■□□□□ 0.23
CLN3-262ENST00000637699 ISPDA4D126 451 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 M0R3H8 397 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 SPRY3O43610 288 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 FSHBP01225 129 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 IGHV3-13P01766 116 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 PGA4P0DJD7 388 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 PGA3P0DJD8 388 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 CCNOP22674 350 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 ZNF74Q16587 644 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 RBMS3Q6XE24 437 aaKnown RBP16.47■□□□□ 0.23
CLN3-262ENST00000637699 DPPA2Q7Z7J5 298 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 LRRC18Q8N456 261 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 BHLHE22Q8NFJ8 381 aaPredicted RBP16.47■□□□□ 0.23
CLN3-262ENST00000637699 ELMOD3Q96FG2 381 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 DUX5Q96PT3 197 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 C1QTNF5Q9BXJ0 243 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 IKZF5Q9H5V7 419 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 ZNF696Q9H7X3 374 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 NANSQ9NR45 359 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 UBAP1Q9NZ09 502 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 VAPAQ9P0L0 249 aa16.47■□□□□ 0.23
CLN3-262ENST00000637699 CPSF4LA6NMK7 179 aaKnown RBP16.46■□□□□ 0.23
CLN3-262ENST00000637699 KPNA4O00629 521 aaPredicted RBP16.46■□□□□ 0.23
CLN3-262ENST00000637699 CHP2O43745 196 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 MFN2O95140 757 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 HKR1P10072 659 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 PPIBP23284 216 aaKnown RBP16.46■□□□□ 0.23
CLN3-262ENST00000637699 APLNRP35414 380 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 CLRN1P58418 232 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 STX1BP61266 288 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 PAGE3Q5JUK9 113 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 SPATA46Q5T0L3 261 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 ZNF613Q6PF04 617 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 EPGNQ6UW88 154 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 FUNDC1Q8IVP5 155 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 SIGLECL1Q8N7X8 197 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 DVL3Q92997 716 aaPredicted RBP16.46■□□□□ 0.23
CLN3-262ENST00000637699 MCHR2Q969V1 340 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 ZNF347Q96SE7 839 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 TMEM38AQ9H6F2 299 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 SLCO1B3Q9NPD5 702 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 USH1CQ9Y6N9 552 aa16.46■□□□□ 0.23
CLN3-262ENST00000637699 IGHV1-46P01743 117 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 HIST1H2ABP04908 130 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 ZNF84P51523 738 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 HSF2Q03933 536 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 FAM209AQ5JX71 171 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 ENTPD8Q5MY95 495 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 THEM4Q5T1C6 240 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 TTC33Q6PID6 262 aaPredicted RBP16.45■□□□□ 0.22
CLN3-262ENST00000637699 HIST3H2AQ7L7L0 130 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 CPEB3Q8NE35 698 aaKnown RBP16.45■□□□□ 0.22
CLN3-262ENST00000637699 HIPK4Q8NE63 616 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 HIST1H2ACQ93077 130 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 SPDL1Q96EA4 605 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 EVA1AQ9H8M9 152 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 CCDC167Q9P0B6 97 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.45■□□□□ 0.22
CLN3-262ENST00000637699 TRIM33Q9UPN9 1127 aa16.45■□□□□ 0.22
CLN3-262ENST00000637699 FMO6PO60774 539 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 IGHG1P01857 330 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 THY1P04216 161 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 MMP7P09237 267 aaPredicted RBP16.44■□□□□ 0.22
CLN3-262ENST00000637699 UMPSP11172 480 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 GCH1P30793 250 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 MPV17P39210 176 aa16.44■□□□□ 0.22
CLN3-262ENST00000637699 DUSP7Q16829 419 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms