RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CHRNGP07510 517 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 NR2F1P10589 423 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 CPA3P15088 417 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 NQO1P15559 274 aaKnown RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 MDH2P40926 338 aaKnown RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 CSNK1A1P48729 337 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 PCBP3P57721 371 aaKnown RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 BPIFB3P59826 476 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 HOXC5Q00444 222 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 LARS2Q15031 903 aaKnown RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 FAM69AQ5T7M9 428 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 SERPINA11Q86U17 422 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 PEX5LQ8IYB4 626 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 ZNF101Q8IZC7 436 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 CCDC63Q8NA47 563 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 OR52P1PQ8NH57 321 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 AGR3Q8TD06 166 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 THOC1Q96FV9 657 aaKnown RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 ARHGDIGQ99819 225 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 SLC35A5Q9BS91 424 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 LRMDAQ9H2I8 198 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 CYSLTR2Q9NS75 346 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLN3-249ENST00000636685 PRDM4Q9UKN5 801 aa12.12□□□□□ -0.47
CLN3-249ENST00000636685 V9GYY5 206 aaPredicted RBP12.12□□□□□ -0.47
CLN3-249ENST00000636685 ZNF816-ZNF321PA0A0X1KG74 233 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 A0A1W2PPM1 405 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 OR2T1O43869 369 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 GLRA3O75311 464 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 SERPINI2O75830 405 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 FGF4P08620 206 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 RPS2P15880 293 aaKnown RBP12.11□□□□□ -0.47
CLN3-249ENST00000636685 FUT4P22083 530 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 CCNOP22674 350 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 WNT5AP41221 380 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 CLDN8P56748 225 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 GNB2P62879 340 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 LIN52Q52LA3 116 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 C10orf107Q8IVU9 208 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 ADPRHL1Q8NDY3 354 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 VPS37AQ8NEZ2 397 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 SLC25A40Q8TBP6 338 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 KLF14Q8TD94 323 aaPredicted RBP12.11□□□□□ -0.47
CLN3-249ENST00000636685 MZB1Q8WU39 189 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 ITPKCQ96DU7 683 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 NUDT16L1Q9BRJ7 211 aaKnown RBP12.11□□□□□ -0.47
CLN3-249ENST00000636685 OR2J1Q9GZK6 312 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 TMEM38BQ9NVV0 291 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 ZDHHC8Q9ULC8 765 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 ZNF443Q9Y2A4 671 aaPredicted RBP12.11□□□□□ -0.47
CLN3-249ENST00000636685 CHST2Q9Y4C5 530 aa12.11□□□□□ -0.47
CLN3-249ENST00000636685 IGKV1D-42A0A075B6H8 117 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 A0A087WUJ7 227 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 PRSS51A0A1B0GVH4 220 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 IQCMA0A1B0GVH7 501 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 GPR37O15354 613 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 NPHS1O60500 1241 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 ZNF205O95201 554 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 PTHP01270 115 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 APLNRP35414 380 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 CKAP4Q07065 602 aaKnown RBP12.1□□□□□ -0.47
CLN3-249ENST00000636685 BST1Q10588 318 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 MAPK11Q15759 364 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 TTMPQ5BVD1 217 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 MBNL2Q5VZF2 373 aaKnown RBP12.1□□□□□ -0.47
CLN3-249ENST00000636685 KLBQ86Z14 1044 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 FITM2Q8N6M3 262 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 C11orf44Q8N8P7 122 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 OR4K5Q8NGD3 323 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 OR8J2Q8NGG1 315 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 SLC38A4Q969I6 547 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 TMEM54Q969K7 222 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 PHF21AQ96BD5 680 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 PCGF1Q9BSM1 259 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 TOR3AQ9H497 397 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 KLHL14Q9P2G3 628 aa12.1□□□□□ -0.47
CLN3-249ENST00000636685 TRAV36DV7A0A075B6V5 113 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 FARS2O95363 451 aaKnown RBP12.09□□□□□ -0.47
CLN3-249ENST00000636685 SFTPBP07988 381 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 LIPAP38571 399 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 IER3P46695 156 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 BIDP55957 195 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 PLP2Q04941 152 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 HERPUD1Q15011 391 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 CCDC153Q494R4 210 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 COX20Q5RI15 118 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 RNF220Q5VTB9 566 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 DHRS7BQ6IAN0 325 aaPredicted RBP12.09□□□□□ -0.47
CLN3-249ENST00000636685 LRFN4Q6PJG9 635 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 GDPGP1Q6ZNW5 385 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 Q6ZTK2 550 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 SLC16A14Q7RTX9 510 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 NET1Q7Z628 596 aaPredicted RBP12.09□□□□□ -0.47
CLN3-249ENST00000636685 MUC20Q8N307 709 aaPredicted RBP12.09□□□□□ -0.47
CLN3-249ENST00000636685 RBM15BQ8NDT2 890 aaKnown RBP12.09□□□□□ -0.47
CLN3-249ENST00000636685 SLC41A3Q96GZ6 507 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 GLTPQ9NZD2 209 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 TBK1Q9UHD2 729 aa12.09□□□□□ -0.47
CLN3-249ENST00000636685 CENPVL3A0A0U1RRI6 287 aa12.08□□□□□ -0.48
CLN3-249ENST00000636685 TMEM178BH3BS89 294 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms