RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZNF250P15622 560 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 CCNOP22674 350 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 CFPP27918 469 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 CDAP32320 146 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 AQP2P41181 271 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 CRYBA2P53672 197 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 UCP2P55851 309 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 SELENOVP59797 346 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 MRPS11P82912 194 aaKnown RBP13.78□□□□□ -0.2
CLN3-246ENST00000636228 NFYCQ13952 458 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 HIST3H3Q16695 136 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 TSTQ16762 297 aaKnown RBP13.78□□□□□ -0.2
CLN3-246ENST00000636228 SLC36A2Q495M3 483 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 TTMPQ5BVD1 217 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 ZNF771Q7L3S4 317 aaPredicted RBP13.78□□□□□ -0.2
CLN3-246ENST00000636228 NKAIN4Q8IVV8 208 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 DPP10Q8N608 796 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 CPEB3Q8NE35 698 aaKnown RBP13.78□□□□□ -0.2
CLN3-246ENST00000636228 SEMA6DQ8NFY4 1073 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 DYDC1Q8WWB3 177 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 C11orf40Q8WZ69 217 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 ZNF665Q9H7R5 613 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 IGLV3-9A0A075B6K5 115 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 IQCMA0A1B0GVH7 501 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 SLC22A23A1A5C7 686 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 TPD52L2O43399 206 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 TRMUO75648 421 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 SLC2A10O95528 541 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 FUT1P19526 365 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 GZMMP51124 257 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 UGT2B15P54855 530 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 RPL18Q07020 188 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 HNRNPA0Q13151 305 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 TBC1D28Q2M2D7 210 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 SPATA46Q5T0L3 261 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 PATL1Q86TB9 770 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 RBM15BQ8NDT2 890 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 OR1J1Q8NGS3 322 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 MOSPD2Q8NHP6 518 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 ZNF519Q8TB69 540 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 SNX33Q8WV41 574 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 MPP4Q96JB8 637 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 ZNF426Q9BUY5 554 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 MRPL13Q9BYD1 178 aaKnown RBP13.77□□□□□ -0.21
CLN3-246ENST00000636228 RABEP2Q9H5N1 569 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 NANOGQ9H9S0 305 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 C20orf141Q9NUB4 165 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 GPR160Q9UJ42 338 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 TRIM33Q9UPN9 1127 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 SH3GLB1Q9Y371 365 aa13.77□□□□□ -0.21
CLN3-246ENST00000636228 IGKV1D-43A0A0B4J1Z2 117 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 IGHV1-69-2A0A0G2JMI3 117 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 A0A1W2PRG6 482 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 MCIDASD6RGH6 385 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 PLPP2O43688 288 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 MMP7P09237 267 aaPredicted RBP13.76□□□□□ -0.21
CLN3-246ENST00000636228 PCGF2P35227 344 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 CRYBB2P43320 205 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 RAD52P43351 418 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 ZNF84P51523 738 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 HSF2Q03933 536 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 PLP2Q04941 152 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 LAPTM4AQ15012 233 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 VMACQ2NL98 169 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 PABPC1L2AQ5JQF8 200 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 ACSM5Q6NUN0 579 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 USP51Q70EK9 711 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 NOXO1Q8NFA2 376 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 OR1J2Q8NGS2 313 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 TMEM255BQ8WV15 326 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 ASB10Q8WXI3 467 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 ATP6V1G3Q96LB4 118 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 PLA2G12AQ9BZM1 189 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 SLC19A3Q9BZV2 496 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 G6PC2Q9NQR9 355 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 SLCO1C1Q9NYB5 712 aa13.76□□□□□ -0.21
CLN3-246ENST00000636228 TRAV20A0A0B4J274 112 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 SPRY3O43610 288 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 ENTPD5O75356 428 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 OR7A10O76100 309 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 MPZL1O95297 269 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 SNAP29O95721 258 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 PNPP00491 289 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 PTHP01270 115 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 MT-ND1P03886 318 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 ACADSP16219 412 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 ADRA2CP18825 462 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 MAKP20794 623 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 DRD4P21917 467 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 APLNRP35414 380 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 RBMXP38159 391 aaKnown RBP13.75□□□□□ -0.21
CLN3-246ENST00000636228 MPV17P39210 176 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 ACTG1P63261 375 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 FMODQ06828 376 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 SGCAQ16586 387 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 PCGF3Q3KNV8 242 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 TMEM255AQ5JRV8 349 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 SLC30A8Q8IWU4 369 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 ZNF101Q8IZC7 436 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 ZNF418Q8TF45 676 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms