RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ARL14Q8N4G2 192 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 KDF1Q8NAX2 398 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR4K17Q8NGC6 315 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR1J2Q8NGS2 313 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR2A12Q8NGT7 310 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 NUDCD2Q8WVJ2 157 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 RGP1Q92546 391 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 SLC35A4Q96G79 324 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 PRAP1Q96NZ9 151 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 RHOFQ9HBH0 211 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 UFSP2Q9NUQ7 469 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ASH2LQ9UBL3 628 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 LPAR3Q9UBY5 353 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF780BQ9Y6R6 833 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 TRAV18A0A075B6X5 111 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 TRBV23-1A0A0A0MS06 115 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 A0A0G2JN53 185 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 NPIPB9F8W1W9 429 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF208O43345 1280 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 TXNL1O43396 289 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 LYPD3O95274 346 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 CD14P08571 375 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 TIMP2P16035 220 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ADRA2CP18825 462 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 RAB5CP51148 216 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ACTR1AP61163 376 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 PDGFRLQ15198 375 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ARHGAP11BQ3KRB8 267 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ATPAF1Q5TC12 328 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 TMEM244Q5VVB8 128 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 AWAT2Q6E213 333 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 MFSD12Q6NUT3 480 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF793Q6ZN11 406 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR9A2Q8NGT5 310 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR8S1Q8NH09 359 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR2L2Q8NH16 312 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR5AK2Q8NH90 309 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 GPX8Q8TED1 209 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 CDS1Q92903 461 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 FOXRED1Q96CU9 486 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-212ENST00000619079 LMLNQ96KR4 655 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 PFDN5Q99471 154 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 ZNF426Q9BUY5 554 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 OR2AG1Q9H205 316 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 XKR8Q9H6D3 395 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 TUBA4BQ9H853 241 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 PLAGL1Q9UM63 463 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 POMT1Q9Y6A1 747 aa9.84□□□□□ -0.83
UPF3A-212ENST00000619079 A0A1W2PR48 441 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 C19orf67A6NJJ6 358 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 RHPN2P1A8MT19 583 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 OR2T1O43869 369 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 PRKRAO75569 313 aaKnown RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 ADH1CP00326 375 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 IGHV2-5P01817 119 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 SFTA3P0C7M3 94 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 SRFP11831 508 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 F3P13726 295 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 HIST1H1TP22492 207 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 RUNX3Q13761 415 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 CEBPEQ15744 281 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 OR2B11Q5JQS5 317 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 ACER2Q5QJU3 275 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 NKAIN2Q5VXU1 208 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 OR10K2Q6IF99 312 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 MRM1Q6IN84 353 aaKnown RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 EIF5AL1Q6IS14 154 aaKnown RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF425Q6IV72 752 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 FAM111BQ6SJ93 734 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 OR5AR1Q8NGP9 310 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 TAAR9Q96RI9 348 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 MNTQ99583 582 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 PHB2Q99623 299 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 GPR34Q9UPC5 381 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 WIF1Q9Y5W5 379 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 MYO10Q9HD67 2058 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 TRIOO75962 3097 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 DENND4CQ5VZ89 1909 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 TRBV5-5A0A0J9YX44 114 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 METTL21EPA6NDL7 271 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 MFNGO00587 321 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 CLN5O75503 358 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 LEFTY1O75610 366 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 AIFM1O95831 613 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 AK1P00568 194 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 AMY2AP04746 511 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 C8orf89P0DMQ9 161 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 NANOS3P60323 173 aaKnown RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 EIF5AP63241 154 aaKnown RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 GUCA2AQ02747 115 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 DUSP2Q05923 314 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF750Q32MQ0 723 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 FAM76BQ5HYJ3 339 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 LY6G5CQ5SRR4 150 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 LYG2Q86SG7 212 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 TSPAN10Q9H1Z9 355 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-212ENST00000619079 OR52A5Q9H2C5 316 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 SEMA6CQ9H3T2 930 aa9.83□□□□□ -0.84
UPF3A-212ENST00000619079 TMEM231Q9H6L2 316 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms