RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ASTLQ6HA08 431 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 CNEP1R1Q8N9A8 125 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 FAM174AQ8TBP5 190 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 SECTM1Q8WVN6 248 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF681Q96N22 645 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 GCM1Q9NP62 436 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 TMEM100Q9NV29 134 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 TBX21Q9UL17 535 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 HS3ST3A1Q9Y663 406 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF318Q5VUA4 2279 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF749O43361 778 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 OR10A3P58181 314 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 PLA2G7Q13093 441 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 RAB31Q13636 194 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 LIMS2Q7Z4I7 341 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 NMNAT2Q9BZQ4 307 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 EMC3Q9P0I2 261 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 FBXO7Q9Y3I1 522 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 CACNA1IQ9P0X4 2223 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 HSPB6O14558 160 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 GPR137BO60478 399 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 NSA2O95478 260 aaKnown RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 MT-ATP6P00846 226 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 CSF3P09919 207 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 RPL27P61353 136 aaKnown RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 IAH1Q2TAA2 248 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 LHX8Q68G74 356 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 H1FNTQ75WM6 255 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 KANSL1Q7Z3B3 1105 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 BTLAQ7Z6A9 289 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 KLHDC8BQ8IXV7 354 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 NKAIN3Q8N8D7 197 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 PIGTQ969N2 578 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 SGK3Q96BR1 496 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 SLC25A31Q9H0C2 315 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 CDK5RAP2Q96SN8 1893 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 AKR7A3O95154 331 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 PMS2P2O95744 297 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 NME2P22392 152 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 NPY4RP50391 375 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 BAK1Q16611 211 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 OVCH1Q7RTY7 1134 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 ALPK2Q86TB3 2170 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 ANKRD53Q8N9V6 530 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 FAM71CQ8NEG0 241 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 HMGCLL1Q8TB92 370 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 RAB22AQ9UL26 194 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 BOKQ9UMX3 212 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 A0A0B4J203 849 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 CBX7O95931 251 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 LALBAP00709 142 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 METAP1P53582 386 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 OR1D5P58170 312 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 YBX1P67809 324 aaKnown RBP12.83□□□□□ -0.36
CPSF1-212ENST00000616140 NKX6-1P78426 367 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-212ENST00000616140 SLC22A25Q6T423 547 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 GLIPR1L1Q6UWM5 242 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 OR14J1Q9UGF5 321 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 ATG2BQ96BY7 2078 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 F10P00742 488 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 PPP2CBP62714 309 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 PPP2CAP67775 309 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 BTG2P78543 158 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 PMPCAQ10713 525 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 KCNAB1Q14722 419 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 ACKR1Q16570 336 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 TMEM240Q5SV17 173 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF684Q5T5D7 378 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 FCRL6Q6DN72 434 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 RHOUQ7L0Q8 258 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 CCDC71Q8IV32 467 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-212ENST00000616140 OR10R2Q8NGX6 335 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 CNTNAP3Q9BZ76 1288 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.83□□□□□ -0.36
CPSF1-212ENST00000616140 ATPIF1Q9UII2 106 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 KIF25Q9UIL4 384 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 ANKRD34BA5PLL1 514 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 ARRDC5A6NEK1 342 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 LILRB5O75023 590 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 PMP2P02689 132 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 NAGAP17050 411 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 OR5L1Q8NGL2 311 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 C16orf52Q8NHV5 167 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 BAHD1Q8TBE0 780 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-212ENST00000616140 CTRCQ99895 268 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 SLC25A19Q9HC21 320 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 C1orf123Q9NWV4 160 aa12.83□□□□□ -0.36
CPSF1-212ENST00000616140 A0A1B0GX78 115 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 OTOL1A6NHN0 477 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 MCRIP1C9JLW8 97 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 TOR1AO14656 332 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 EIF4E2O60573 245 aaKnown RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 PRAMEF4O60810 478 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ABHD16AO95870 558 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 MAP2K6P52564 334 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 IKZF1Q13422 519 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 NKAIN1Q4KMZ8 207 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 VWA2Q5GFL6 755 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 XAF1Q6GPH4 301 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 GCDHQ92947 438 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms