RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RIN1Q13671 783 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 TMEM244Q5VVB8 128 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 BEND4Q6ZU67 534 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 CPEB2Q7Z5Q1 589 aaKnown RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 PXKQ7Z7A4 578 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 DCUN1D4Q92564 292 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 SPACA5Q96QH8 159 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 C1orf198Q9H425 327 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 LSM5Q9Y4Y9 91 aaKnown RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 NUMA1Q14980 2115 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 F5H0A9 414 aaPredicted RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC33A1O00400 549 aaPredicted RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 HSPA12AO43301 675 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 PIAS2O75928 621 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 DBHP09172 617 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 SORDQ00796 357 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 PMPCAQ10713 525 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC9A3R2Q15599 337 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 MISPQ8IVT2 679 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 CMTM4Q8IZR5 234 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 THOC3Q96J01 351 aaKnown RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 DOK1Q99704 481 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 VN1R1Q9GZP7 353 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 RBFOX1Q9NWB1 397 aaKnown RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 MTCH2Q9Y6C9 303 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 IGHV4-34P06331 123 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 EPHA1P21709 976 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 CARD18P57730 90 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 FAM53BQ14153 422 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 LAIR1Q6GTX8 287 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 MRM1Q6IN84 353 aaKnown RBP8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 OR52I2Q8NH67 350 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 OR51E1Q8TCB6 317 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 FAM3DQ96BQ1 224 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 CHRDQ9H2X0 955 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 ADGRL4Q9HBW9 690 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 SIGLEC7Q9Y286 467 aa8.12□□□□□ -1.11
PDLIM5-222ENST00000615540 OR6C76A6NM76 312 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 SC5DO75845 299 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 HRGP04196 525 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 PTHLHP12272 177 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ZNF35P13682 527 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ABCD3P28288 659 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 BDKRB2P30411 391 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 FASLGP48023 281 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 DIO1P49895 249 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 GABREP78334 506 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 GK2Q14410 553 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 OPN5Q6U736 354 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 GSG1LQ6UXU4 331 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 RABEPKQ7Z6M1 372 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 OR5H6Q8NGV6 325 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 SNAPC3Q92966 411 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 MIB2Q96AX9 1013 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 DERL3Q96Q80 235 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 TSPAN32Q96QS1 320 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 CLCC1Q96S66 551 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 TMEM43Q9BTV4 400 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ARRDC1-AS1Q9H2J1 176 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 BANF2Q9H503 90 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 APMAPQ9HDC9 416 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 CHST11Q9NPF2 352 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC26A5P58743 744 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 STK11Q15831 433 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 FAM198BQ6UWH4 519 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 SMRP1Q8NCR6 262 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 BORCS8Q96FH0 119 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 PHB2Q99623 299 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 EIF4E2O60573 245 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 HOXC4P09017 264 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 GLULP15104 373 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ERP29P30040 261 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 DLSTP36957 453 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 UBE2MP61081 183 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC35A1P78382 337 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 HEPHL1Q6MZM0 1159 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ITPKCQ96DU7 683 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 KCNK15Q9H427 330 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 TAS2R8Q9NYW2 309 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 NPAP1Q9NZP6 1156 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 MBD2Q9UBB5 411 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 MRPS28Q9Y2Q9 187 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 MYO15AQ9UKN7 3530 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 E9PI62 339 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 EPHA4P54764 986 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 FUT5Q11128 374 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ZNF74Q16587 644 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 IDO2Q6ZQW0 420 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 OR10K1Q8NGX5 313 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 PIGLQ9Y2B2 252 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 CCDC163A0A0D9SF12 145 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 PRSS37A4D1T9 235 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 TRABD2BA6NFA1 517 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 DPM1O60762 260 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 SLC43A1O75387 559 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 MTRF1O75570 445 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 NXPH3O95157 252 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 DDAH2O95865 285 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 APLNRP35414 380 aa8.11□□□□□ -1.11
PDLIM5-222ENST00000615540 ZMYND11Q15326 602 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms