RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 THBS4P35443 961 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 RAB1AP62820 205 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SAMD4BQ5PRF9 694 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ARPINQ7Z6K5 226 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 YTHDF3Q7Z739 585 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SLC30A8Q8IWU4 369 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 CDK20Q8IZL9 346 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SLC22A24Q8N4F4 322 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 BHLHE22Q8NFJ8 381 aaPredicted RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 RASSF5Q8WWW0 418 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 LZICQ8WZA0 190 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SAMD8Q96LT4 415 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SLC38A2Q96QD8 506 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SYT3Q9BQG1 590 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SOX7Q9BT81 388 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 POFUT1Q9H488 388 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 ESRP2Q9H6T0 727 aaKnown RBP4.93□□□□□ -1.62
CPNE3-208ENST00000614678 HHATLQ9HCP6 504 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 DLL4Q9NR61 685 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 SLC7A8Q9UHI5 535 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 NOX1Q9Y5S8 564 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 LYVE1Q9Y5Y7 322 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 COL6A5A8TX70 2615 aa4.93□□□□□ -1.62
CPNE3-208ENST00000614678 LOC100509620A0A075B734 347 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 IGHV4-30-2A0A087WSY4 118 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RNF223E7ERA6 249 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OVOL3O00110 214 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 MT-ATP6P00846 226 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TP53P04637 393 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 HIST1H2ABP04908 130 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DBHP09172 617 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ACADSP16219 412 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ATP5J2P56134 94 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TRIM25Q14258 630 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ADIPOQQ15848 244 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 C11orf71Q6IPW1 123 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 HIST3H2AQ7L7L0 130 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 NAA40Q86UY6 237 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SVOPLQ8N434 492 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ICA1LQ8NDH6 482 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR4K13Q8NH42 304 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR6X1Q8NH79 312 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF519Q8TB69 540 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 HIST1H2ACQ93077 130 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ALPK1Q96QP1 1244 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 NMNAT3Q96T66 252 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 PIP5K1AQ99755 562 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 HCAR1Q9BXC0 346 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 IL1RAPQ9NPH3 570 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 CA10Q9NS85 328 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM38BQ9NVV0 291 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 LOC102725191A0A1B0GVB3 256 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RPL36A-HNRNPH2H7BZ11 118 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DHHO43323 396 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR10H3O60404 316 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 GADD45GO95257 159 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 CALB2P22676 271 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 EPHA2P29317 976 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RPL4P36578 427 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 CLRN1P58418 232 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 PRPS1P60891 318 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SGCAQ16586 387 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZSWIM7Q19AV6 140 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF362Q5T0B9 420 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF770Q6IQ21 691 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 PGBD2Q6P3X8 592 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ADGRG5Q8IZF4 528 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 MUC15Q8N387 334 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SDR9C7Q8NEX9 313 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 NOXO1Q8NFA2 376 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ANKK1Q8NFD2 765 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SORCS2Q96PQ0 1159 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TMUB1Q9BVT8 246 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 NUAK2Q9H093 628 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DENND2DQ9H6A0 471 aaPredicted RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 MED20Q9H944 212 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 WDR76Q9H967 626 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RCE1Q9Y256 329 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 A0A1W2PRQ8 180 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR6C65A6NJZ3 312 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 IFNA14P01570 189 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 IGLV1-44P01699 117 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 FABP3P05413 133 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 HIST1H1CP16403 213 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 RHCEP18577 417 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 NOS3P29474 1203 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ALDH3B1P43353 468 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 GSSP48637 474 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 UBE2NP61088 152 aaKnown RBP4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZP4Q12836 540 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DGCR6Q14129 220 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM236Q5W0B7 351 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF774Q6NX45 483 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 PGM2L1Q6PCE3 622 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 TMEM108Q6UXF1 575 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 SPNS3Q6ZMD2 512 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 ZNF611Q8N823 705 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 OR4C15Q8NGM1 316 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 DHRS1Q96LJ7 313 aa4.92□□□□□ -1.62
CPNE3-208ENST00000614678 FOXC2Q99958 501 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms