RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 OR10R2Q8NGX6 335 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 TGM7Q96PF1 710 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 OR2A5Q96R48 311 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 OR10A5Q9H207 317 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 IL23AQ9NPF7 189 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 MKL2Q9ULH7 1088 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 TRAV8-7A0A075B6U6 113 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 PIN1P1O15428 100 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 PRH1P02810 166 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 OPN1LWP04000 364 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 SLC9A3R2Q15599 337 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 SLC35D3Q5M8T2 416 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 TMEM184AQ6ZMB5 413 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 PXKQ7Z7A4 578 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 ETFBKMTQ8IXQ9 262 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 ZFP82Q8N141 532 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 SLC25A38Q96DW6 304 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 EMC9Q9Y3B6 208 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 A0A0D9SG52 128 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 RPS10-NUDT3A0A1W2PQS6 291 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 ZNF878C9JN71 531 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 M0R036 132 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 HRKO00198 91 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 GSTZ1O43708 216 aaPredicted RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 RPL18Q07020 188 aaKnown RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 MAMDC2Q7Z304 686 aaPredicted RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 OR1J2Q8NGS2 313 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 C2CD4CQ8TF44 421 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 C3orf49Q96BT1 292 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 PELOQ9BRX2 385 aaKnown RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 NKX6-2Q9C056 277 aaPredicted RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 C12orf10Q9HB07 376 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 DNAJB12Q9NXW2 375 aaKnown RBP11.47□□□□□ -0.57
LIG1-221ENST00000613670 TAS2R4Q9NYW5 299 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 COPS7AQ9UBW8 275 aa11.47□□□□□ -0.57
LIG1-221ENST00000613670 LOC100289279A0A1B0GTE1 492 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 XRCC3O43542 346 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 HTR3BO95264 441 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 MPIG6BO95866 241 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 ERGP11308 486 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 RAB38P57729 211 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 NFATC4Q14934 902 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 FAM199XQ6PEV8 388 aaPredicted RBP11.46□□□□□ -0.57
LIG1-221ENST00000613670 SEZ6L2Q6UXD5 910 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 COX15Q7KZN9 410 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 CRIPAKQ8N1N5 446 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 TEX19Q8NA77 164 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 FAM174AQ8TBP5 190 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 PPP1R14AQ96A00 147 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 SLC41A2Q96JW4 573 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 ZNF587Q96SQ5 575 aaPredicted RBP11.46□□□□□ -0.57
LIG1-221ENST00000613670 UBQLN4Q9NRR5 601 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 FAM186AA6NE01 2351 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 H7C417 338 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 ZNF264O43296 627 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 ZNF208O43345 1280 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 KLF4O43474 513 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 GALR3O60755 368 aaPredicted RBP11.46□□□□□ -0.57
LIG1-221ENST00000613670 IL5P05113 134 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 VSIG10L2P0DP72 767 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 HSD11B1P28845 292 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 EFNB2P52799 333 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 RPS15P62841 145 aaKnown RBP11.46□□□□□ -0.57
LIG1-221ENST00000613670 DMRTC1Q5HYR2 192 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 CLVS2Q5SYC1 327 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 TRAPPC6BQ86SZ2 158 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 ZNF440Q8IYI8 595 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 SPICQ8N5J4 248 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 NPRL2Q8WTW4 380 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 RSC1A1Q92681 617 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 THRSPQ92748 146 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 FOXRED1Q96CU9 486 aaPredicted RBP11.46□□□□□ -0.57
LIG1-221ENST00000613670 ZNF75AQ96N20 296 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 LMF2Q9BU23 707 aaKnown RBP11.46□□□□□ -0.57
LIG1-221ENST00000613670 EVA1AQ9H8M9 152 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 HEXA-AS1Q9H8Q6 139 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 MTFP1Q9UDX5 166 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 HHLA2Q9UM44 414 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 MOKQ9UQ07 419 aa11.46□□□□□ -0.57
LIG1-221ENST00000613670 SCN8AQ9UQD0 1980 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 A0A087WV48 116 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 TMEM269A0A1B0GVZ9 245 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 EFCAB7A8K855 629 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 PMS2P2O95744 297 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 RAB3AP20336 220 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 HNRNPA2B1P22626 353 aaKnown RBP11.46□□□□□ -0.58
LIG1-221ENST00000613670 ADPRHP54922 357 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 PLCXD2Q0VAA5 305 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 ELFN2Q5R3F8 820 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 SHISA6Q6ZSJ9 500 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 GPAT4Q86UL3 456 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 C16orf52Q8NHV5 167 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 ARL11Q969Q4 196 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 C10orf90Q96M02 699 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 MOGAT1Q96PD6 335 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 SELENOIQ9C0D9 397 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 CST11Q9H112 138 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 LYRM4Q9HD34 91 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 CHMP1AQ9HD42 196 aaPredicted RBP11.46□□□□□ -0.58
LIG1-221ENST00000613670 TMEM74BQ9NUR3 256 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms