RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ZNF84P51523 738 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 RAP1BP61224 184 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 RAP1AP62834 184 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 PGGHGQ32M88 737 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 FAM205BPQ63HN1 556 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 ZNF770Q6IQ21 691 aaPredicted RBP13.23□□□□□ -0.29
LIG1-219ENST00000600055 SMARCD3Q6STE5 483 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 CCDC36Q8IYA8 594 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 FANK1Q8TC84 345 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 SMAP2Q8WU79 429 aaPredicted RBP13.23□□□□□ -0.29
LIG1-219ENST00000600055 IGFBPL1Q8WX77 278 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 SAMD8Q96LT4 415 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 ZNF570Q96NI8 536 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 GPX7Q96SL4 187 aaPredicted RBP13.23□□□□□ -0.29
LIG1-219ENST00000600055 FOXC2Q99958 501 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 LRMDAQ9H2I8 198 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 OR52D1Q9H346 318 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 REEP1Q9H902 201 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 NRIP3Q9NQ35 241 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 LAMP3Q9UQV4 416 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 UGT2A1Q9Y4X1 527 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 ATP23Q9Y6H3 246 aa13.23□□□□□ -0.29
LIG1-219ENST00000600055 RAI1Q7Z5J4 1906 aaPredicted RBP13.23□□□□□ -0.29
LIG1-219ENST00000600055 SOCS2O14508 198 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 PPP1R3DO95685 299 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 DANCRP0C864 163 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 OR8G3PP0DMU2 310 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 CALCRP30988 508 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 ARR3P36575 388 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 GIPRP48546 466 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 PTDSS1P48651 473 aaKnown RBP13.22□□□□□ -0.29
LIG1-219ENST00000600055 NAAAQ02083 359 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 TSPAN31Q12999 210 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 KRR1Q13601 381 aaKnown RBP13.22□□□□□ -0.29
LIG1-219ENST00000600055 ETFDHQ16134 617 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 GSG1Q2KHT4 349 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 RFX4Q33E94 735 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 C3orf36Q3SXR2 165 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 THEM4Q5T1C6 240 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 DPY19L2P2Q6ZN68 376 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 YTHDF3Q7Z739 585 aaKnown RBP13.22□□□□□ -0.29
LIG1-219ENST00000600055 TMEM179BQ7Z7N9 219 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 DEPDC4Q8N2C3 294 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 FAM169BQ8N8A8 192 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 AQP11Q8NBQ7 271 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 PIGTQ969N2 578 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 SLCO4A1Q96BD0 722 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 MS4A3Q96HJ5 214 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 ZNF75AQ96N20 296 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 RBP7Q96R05 134 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 NDEL1Q9GZM8 345 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 MMADHCQ9H3L0 296 aaPredicted RBP13.22□□□□□ -0.29
LIG1-219ENST00000600055 EGLN3Q9H6Z9 239 aa13.22□□□□□ -0.29
LIG1-219ENST00000600055 SLC22A23A1A5C7 686 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 XKRYO14609 159 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 FKBP6O75344 327 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 PAX7P23759 505 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 SDHAP31040 664 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 RAB1AP62820 205 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 RAB39AQ14964 217 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 SGCAQ16586 387 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 MICAQ29983 383 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 GPR139Q6DWJ6 353 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 ZNF620Q6ZNG0 422 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 PTCHD4Q6ZW05 846 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 LRRC18Q8N456 261 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 LINC00471Q8N535 108 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 NANOS1Q8WY41 292 aaKnown RBP13.21□□□□□ -0.29
LIG1-219ENST00000600055 GTPBP3Q969Y2 492 aaKnown RBP13.21□□□□□ -0.29
LIG1-219ENST00000600055 NABP1Q96AH0 204 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 ERMAPQ96PL5 475 aaPredicted RBP13.21□□□□□ -0.29
LIG1-219ENST00000600055 KCNS3Q9BQ31 491 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 CXXC4Q9H2H0 198 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 SMURF2Q9HAU4 748 aa13.21□□□□□ -0.29
LIG1-219ENST00000600055 BEX4Q9NWD9 120 aaPredicted RBP13.21□□□□□ -0.29
LIG1-219ENST00000600055 OTOGQ6ZRI0 2925 aa13.21□□□□□ -0.3
LIG1-219ENST00000600055 IGHV2OR16-5A0A0B4J2B6 119 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 PRSS37A4D1T9 235 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 SMPD2O60906 423 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 UBL3O95164 117 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 FARS2O95363 451 aaKnown RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 RAB36O95755 333 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 TXNDC12O95881 172 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 CD8AP01732 235 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 CRYAAP02489 173 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 SCG5P05408 212 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 IGFBP1P08833 259 aaPredicted RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 NR2C1P13056 603 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 ZNF14P17017 642 aaPredicted RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 SLC6A6P31641 620 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 CDKN2AP42771 156 aaKnown RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 FABP6P51161 128 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 RPS6KA3P51812 740 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 MRPS34P82930 218 aaKnown RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 HGFACQ04756 655 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 DBPQ10586 325 aaPredicted RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 ASRGL1Q7L266 308 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 SLC16A14Q7RTX9 510 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 PAPD5Q8NDF8 572 aaKnown RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 OR10G2Q8NGC3 310 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms