RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 TEX13CA0A0J9YWL9 993 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 DAPL1A0PJW8 107 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 KIAA1324LA8MWY0 1029 aaPredicted RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 CCRL2O00421 344 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 SNPHO15079 494 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 AIREO43918 545 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 WDR1O75083 606 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 TXNDC12O95881 172 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 PTHP01270 115 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 RAF1P04049 648 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 F13BP05160 661 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 FREM3P0C091 2139 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 CCL3P10147 92 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 BMP5P22003 454 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 SERPINB10P48595 397 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 CENPAP49450 140 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 DAP3P51398 398 aaKnown RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 WNT4P56705 351 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 FHL1Q13642 323 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 TOMM20Q15388 145 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 OR7A5Q15622 319 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 GLYR1Q49A26 553 aaPredicted RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 RAET1LQ5VY80 246 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 TIGD3Q6B0B8 471 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 LEG1Q6P5S2 330 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 PAMR1Q6UXH9 720 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 H1FNTQ75WM6 255 aaPredicted RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 ACBD7Q8N6N7 88 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 WDSUB1Q8N9V3 476 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 CYB561A3Q8NBI2 242 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 SDR9C7Q8NEX9 313 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 BBS1Q8NFJ9 593 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 OR2T4Q8NH00 348 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 SARAFQ96BY9 339 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 YIPF6Q96EC8 236 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 LRRC46Q96FV0 321 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 CNN2Q99439 309 aaKnown RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 TEAD3Q99594 435 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 DOK1Q99704 481 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 JAM3Q9BX67 310 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 OR11A1Q9GZK7 315 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 MED20Q9H944 212 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 ISYNA1Q9NPH2 558 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 HAO2Q9NYQ3 351 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 B4GALT7Q9UBV7 327 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 BOKQ9UMX3 212 aaPredicted RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 MOKQ9UQ07 419 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 ADAM18Q9Y3Q7 739 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 ATRQ13535 2644 aa9.06□□□□□ -0.96
SS18-210ENST00000578700 FN1P02751 2386 aaKnown RBP9.06□□□□□ -0.96
SS18-210ENST00000578700 A0A1B0GVC2 190 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 ZC3H12DA2A288 527 aaKnown RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 A6NIZ1 184 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 C11orf98E9PRG8 122 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 H3BML4 177 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 M0R082 166 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 PLPP3O14495 311 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 AQP7O14520 342 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 SEC14L5O43304 696 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 AKAP8O43823 692 aaKnown RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 GLSO94925 669 aaPredicted RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 GABARAPO95166 117 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 BCL10O95999 233 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 IGHG3P01860 377 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 IGHA1P01876 353 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 SCG5P05408 212 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 GABRA1P14867 456 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 ZNF17P17021 662 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 PSMA1P25786 263 aaKnown RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 PCSK6P29122 969 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 RGS6P49758 472 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 ETV1P50549 477 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 AGFG1P52594 562 aaKnown RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 BLVRAP53004 296 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 SLC25A1P53007 311 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 RAP1BP61224 184 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 RAP1AP62834 184 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 PUDPQ08623 228 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 MLLT11Q13015 90 aaPredicted RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 KRR1Q13601 381 aaKnown RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 POU4F3Q15319 338 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 TSTQ16762 297 aaKnown RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 RIPPLY2Q5TAB7 128 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 FAM205BPQ63HN1 556 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 DNM1P34Q6PK57 102 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 HDDC2Q7Z4H3 204 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 PRIMA1Q86XR5 153 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 GTPBP8Q8N3Z3 284 aaPredicted RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 KBTBD8Q8NFY9 601 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 OR10H4Q8NGA5 316 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 OR52N1Q8NH53 320 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 ZNF417Q8TAU3 575 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 LINC01560Q8TB33 94 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 FAM222BQ8WU58 562 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 PTP4A1Q93096 173 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 MBD6Q96DN6 1003 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 Q96M85 177 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 OR5B2Q96R09 309 aa9.05□□□□□ -0.96
SS18-210ENST00000578700 ZNF587Q96SQ5 575 aaPredicted RBP9.05□□□□□ -0.96
SS18-210ENST00000578700 NMNAT3Q96T66 252 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms