RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 H1FNTQ75WM6 255 aaPredicted RBP9.06□□□□□ -0.96
SS18-207ENST00000577636 ACBD7Q8N6N7 88 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 WDSUB1Q8N9V3 476 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 CYB561A3Q8NBI2 242 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 SDR9C7Q8NEX9 313 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 BBS1Q8NFJ9 593 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 OR2T4Q8NH00 348 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 SARAFQ96BY9 339 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 YIPF6Q96EC8 236 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 LRRC46Q96FV0 321 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 MS4A3Q96HJ5 214 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 CNN2Q99439 309 aaKnown RBP9.06□□□□□ -0.96
SS18-207ENST00000577636 TEAD3Q99594 435 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 DOK1Q99704 481 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 JAM3Q9BX67 310 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 OR11A1Q9GZK7 315 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 MED20Q9H944 212 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 ISYNA1Q9NPH2 558 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 HAO2Q9NYQ3 351 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 B4GALT7Q9UBV7 327 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 BOKQ9UMX3 212 aaPredicted RBP9.06□□□□□ -0.96
SS18-207ENST00000577636 MOKQ9UQ07 419 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 ADAM18Q9Y3Q7 739 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 ZNF407Q9C0G0 2248 aa9.06□□□□□ -0.96
SS18-207ENST00000577636 ANKHD1Q8IWZ3 2542 aaKnown RBP9.06□□□□□ -0.96
SS18-207ENST00000577636 PHF3Q92576 2039 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 A0A1B0GVC2 190 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 ZC3H12DA2A288 527 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 A6NIZ1 184 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 C11orf98E9PRG8 122 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 H3BML4 177 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 M0R082 166 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PLPP3O14495 311 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 AQP7O14520 342 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 SEC14L5O43304 696 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 AKAP8O43823 692 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 GLSO94925 669 aaPredicted RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 GABARAPO95166 117 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 BCL10O95999 233 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 IGHG3P01860 377 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 IGHA1P01876 353 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 SCG5P05408 212 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 GABRA1P14867 456 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 ZNF17P17021 662 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PSMA1P25786 263 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 PCSK6P29122 969 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 RGS6P49758 472 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 ETV1P50549 477 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 AGFG1P52594 562 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 BLVRAP53004 296 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 SLC25A1P53007 311 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 RAP1BP61224 184 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 RAP1AP62834 184 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PUDPQ08623 228 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 MLLT11Q13015 90 aaPredicted RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 KRR1Q13601 381 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 POU4F3Q15319 338 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 TSTQ16762 297 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 RIPPLY2Q5TAB7 128 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 FAM205BPQ63HN1 556 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 DNM1P34Q6PK57 102 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 HDDC2Q7Z4H3 204 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PRIMA1Q86XR5 153 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 GTPBP8Q8N3Z3 284 aaPredicted RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 KBTBD8Q8NFY9 601 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 OR10H4Q8NGA5 316 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 OR52N1Q8NH53 320 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 ZNF417Q8TAU3 575 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 LINC01560Q8TB33 94 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 FAM222BQ8WU58 562 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PTP4A1Q93096 173 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 MBD6Q96DN6 1003 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 Q96M85 177 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 OR5B2Q96R09 309 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 ZNF587Q96SQ5 575 aaPredicted RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 NMNAT3Q96T66 252 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PIGQQ9BRB3 760 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 PTDSS2Q9BVG9 487 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 REPIN1Q9BWE0 567 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 ERVK13-1Q9NX77 482 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 SEC14L4Q9UDX3 406 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 FBXL2Q9UKC9 423 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 ZNF346Q9UL40 294 aaKnown RBP9.05□□□□□ -0.96
SS18-207ENST00000577636 B3GALT5Q9Y2C3 310 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 HDGFL3Q9Y3E1 203 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 DNHD1Q96M86 4753 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 VPS13CQ709C8 3753 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 DNAJC13O75165 2243 aa9.05□□□□□ -0.96
SS18-207ENST00000577636 NINQ8N4C6 2090 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 TUBAL3A6NHL2 446 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 LIPT2A6NK58 231 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 HSPB2A8KAH6 182 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 C12orf71A8MTZ7 269 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 DVL2O14641 736 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 APOL3O95236 402 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 ATE1O95260 518 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 LY6G6DO95868 133 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 MT-ND5P03915 603 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 SBK2P0C263 348 aa9.04□□□□□ -0.96
SS18-207ENST00000577636 SPI1P17947 270 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms