RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 H0YC42 278 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 PLPP3O14495 311 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 FABP7O15540 132 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 ZNF780AO75290 641 aaPredicted RBP9.09□□□□□ -0.96
VPS53-220ENST00000576149 ECDO95905 644 aaPredicted RBP9.09□□□□□ -0.96
VPS53-220ENST00000576149 IGHMP01871 453 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 HLA-DQA2P01906 255 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 KIR3DL2P43630 455 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 CCR9P51686 369 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 ART1P52961 327 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 BLVRAP53004 296 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 FOXL2P58012 376 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 ARPC4P59998 168 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 MRPS10P82664 201 aaKnown RBP9.09□□□□□ -0.96
VPS53-220ENST00000576149 SLC17A1Q14916 467 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 SHBQ15464 509 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 KANSL1Q7Z3B3 1105 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 MISPQ8IVT2 679 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 DNAAF1Q8NEP3 725 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 OR51A4Q8NGJ6 313 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 OR56B4Q8NH76 319 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 DEDD2Q8WXF8 326 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 ASB17Q8WXJ9 295 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 GCDHQ92947 438 aaPredicted RBP9.09□□□□□ -0.96
VPS53-220ENST00000576149 TMEM106AQ96A25 262 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 OR8B4Q96RC9 309 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 UQCC2Q9BRT2 126 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 SEMA4CQ9C0C4 833 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 OR11A1Q9GZK7 315 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 DUSP15Q9H1R2 295 aaPredicted RBP9.09□□□□□ -0.96
VPS53-220ENST00000576149 ELOVL3Q9HB03 270 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 EMC7Q9NPA0 242 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 MRPL22Q9NWU5 206 aaKnown RBP9.09□□□□□ -0.96
VPS53-220ENST00000576149 STMN3Q9NZ72 180 aa9.09□□□□□ -0.96
VPS53-220ENST00000576149 IGLV3-12A0A075B6K2 115 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 ANXA2P2A6NMY6 339 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 GPR171O14626 319 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 TOX3O15405 576 aaPredicted RBP9.08□□□□□ -0.96
VPS53-220ENST00000576149 OR2T1O43869 369 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 SLC16A7O60669 478 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 KRT33AO76009 404 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 OR6A2O95222 327 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 AHSA1O95433 338 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 ANXA2P07355 339 aaKnown RBP9.08□□□□□ -0.96
VPS53-220ENST00000576149 MNDAP41218 407 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 RAD52P43351 418 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 SCAND1P57086 179 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 SLC26A5P58743 744 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 RPS15P62841 145 aaKnown RBP9.08□□□□□ -0.96
VPS53-220ENST00000576149 MEP1BQ16820 701 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 COL28A1Q2UY09 1125 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 BTBD16Q32M84 506 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 WDR38Q5JTN6 314 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 TMEM69Q5SWH9 247 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 METTL11BQ5VVY1 283 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 TMEM71Q6P5X7 295 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 C5orf46Q6UWT4 87 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 TMPRSS12Q86WS5 348 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 ZNF679Q8IYX0 411 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 APCDD1LQ8NCL9 501 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 FCAMRQ8WWV6 532 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 MCHR2Q969V1 340 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 PHF21AQ96BD5 680 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 ZNF587Q96SQ5 575 aaPredicted RBP9.08□□□□□ -0.96
VPS53-220ENST00000576149 HRASLSQ9HDD0 168 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 MRPL39Q9NYK5 338 aaKnown RBP9.08□□□□□ -0.96
VPS53-220ENST00000576149 RCE1Q9Y256 329 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 CEP192Q8TEP8 1941 aa9.08□□□□□ -0.96
VPS53-220ENST00000576149 SLC22A23A1A5C7 686 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 FTCDNL1E5RQL4 147 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 AKR7A2O43488 359 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 GMDSO60547 372 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 LDOC1O95751 146 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 MAS1P04201 325 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 CTLA4P16410 223 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 CSRP1P21291 193 aaKnown RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 CDK2P24941 298 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 AP3S2P59780 193 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ROM1Q03395 351 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ST3GAL2Q16842 350 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 TEX30Q5JUR7 227 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 OTPQ5XKR4 325 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ZNF574Q6ZN55 896 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 C16orf47Q6ZP98 133 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 SLC35D2Q76EJ3 337 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 TMPRSS9Q7Z410 1059 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 RABEPKQ7Z6M1 372 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 CDH24Q86UP0 819 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 SLC38A9Q8NBW4 561 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 NFAM1Q8NET5 270 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 RNF128Q8TEB7 428 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 C15orf40Q8WUR7 153 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 TMEM234Q8WY98 164 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ATOH1Q92858 354 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 CLDN23Q96B33 292 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 C8orf44Q96CB5 159 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 FOXN4Q96NZ1 517 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ULBP3Q9BZM4 244 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 C20orf85Q9H1P6 137 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 MRPL15Q9P015 296 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms