RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ADIPOQQ15848 244 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 SWI5Q1ZZU3 235 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 CLEC12BQ2HXU8 276 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 ANKDD1AQ495B1 522 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 VHLLQ6RSH7 139 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 RRM2BQ7LG56 351 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 OR4F15Q8NGB8 312 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 OR4K5Q8NGD3 323 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 OR52J3Q8NH60 311 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 FBXO17Q96EF6 278 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 FAM46AQ96IP4 442 aaKnown RBP13.02□□□□□ -0.33
VPS39-210ENST00000568357 DHRS1Q96LJ7 313 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 TSPAN32Q96QS1 320 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 KCNK17Q96T54 332 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 BDH2Q9BUT1 245 aa13.02□□□□□ -0.33
VPS39-210ENST00000568357 SMAD7O15105 426 aaKnown RBP13.01□□□□□ -0.33
VPS39-210ENST00000568357 SLC2A10O95528 541 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 OR4A8P0C604 315 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 ZNF35P13682 527 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 ITGA2P17301 1181 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 CALB2P22676 271 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 PCSK6P29122 969 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 THBS4P35443 961 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 OMPP47874 163 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 LIMS1P48059 325 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 ERVK-25P63136 954 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 FMODQ06828 376 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 TNK1Q13470 666 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 RAB39AQ14964 217 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 ZBED5Q49AG3 693 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 FGD3Q5JSP0 725 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 C10orf128Q5T292 105 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 CYP2R1Q6VVX0 501 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 DNM1P46Q6ZS02 220 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 HDDC2Q7Z4H3 204 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 ZNF584Q8IVC4 421 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 NUP37Q8NFH4 326 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 IL17RDQ8NFM7 739 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 ZNF519Q8TB69 540 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 COX4I2Q96KJ9 171 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 GPA33Q99795 319 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 DENND2DQ9H6A0 471 aaPredicted RBP13.01□□□□□ -0.33
VPS39-210ENST00000568357 STX18Q9P2W9 335 aaKnown RBP13.01□□□□□ -0.33
VPS39-210ENST00000568357 UGT2A1Q9Y4X1 527 aa13.01□□□□□ -0.33
VPS39-210ENST00000568357 COL6A5A8TX70 2615 aa13□□□□□ -0.33
VPS39-210ENST00000568357 SH3PXD2BA1X283 911 aa13□□□□□ -0.33
VPS39-210ENST00000568357 UBL3O95164 117 aa13□□□□□ -0.33
VPS39-210ENST00000568357 RAB36O95755 333 aa13□□□□□ -0.33
VPS39-210ENST00000568357 ATP6V1B2P21281 511 aa13□□□□□ -0.33
VPS39-210ENST00000568357 CDAP32320 146 aa13□□□□□ -0.33
VPS39-210ENST00000568357 ZNF84P51523 738 aa13□□□□□ -0.33
VPS39-210ENST00000568357 MS4A2Q01362 244 aa13□□□□□ -0.33
VPS39-210ENST00000568357 CHRNB3Q05901 458 aa13□□□□□ -0.33
VPS39-210ENST00000568357 RAB35Q15286 201 aa13□□□□□ -0.33
VPS39-210ENST00000568357 ETFDHQ16134 617 aa13□□□□□ -0.33
VPS39-210ENST00000568357 SLC25A47Q6Q0C1 308 aa13□□□□□ -0.33
VPS39-210ENST00000568357 NSMAFQ92636 917 aa13□□□□□ -0.33
VPS39-210ENST00000568357 ALG12Q9BV10 488 aa13□□□□□ -0.33
VPS39-210ENST00000568357 IL1RAPQ9NPH3 570 aa13□□□□□ -0.33
VPS39-210ENST00000568357 ACTR3BQ9P1U1 418 aa13□□□□□ -0.33
VPS39-210ENST00000568357 SIGLEC7Q9Y286 467 aa13□□□□□ -0.33
VPS39-210ENST00000568357 TMEM5Q9Y2B1 443 aa13□□□□□ -0.33
VPS39-210ENST00000568357 ADAM18Q9Y3Q7 739 aa13□□□□□ -0.33
VPS39-210ENST00000568357 H7C417 338 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 SSX4O60224 188 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 GADD45GO95257 159 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 FARS2O95363 451 aaKnown RBP12.99□□□□□ -0.33
VPS39-210ENST00000568357 LY6G6DO95868 133 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 SERPINA5P05154 406 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 FABP3P05413 133 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 CD14P08571 375 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 NR4A1P22736 598 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 RPL4P36578 427 aaKnown RBP12.99□□□□□ -0.33
VPS39-210ENST00000568357 FXYD6P3P58550 94 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 MRPS34P82930 218 aaKnown RBP12.99□□□□□ -0.33
VPS39-210ENST00000568357 CD47Q08722 323 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 DAG1Q14118 895 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 NRN1LQ496H8 165 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 THEM4Q5T1C6 240 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 KRT80Q6KB66 452 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 ZER1Q7Z7L7 766 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 LRRC18Q8N456 261 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 ARIH2OSQ8N7S6 290 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 NABP1Q96AH0 204 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 MCUR1Q96AQ8 359 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 Q96M85 177 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 RBP7Q96R05 134 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 SIAEQ9HAT2 523 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 SMURF2Q9HAU4 748 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 BARX1Q9HBU1 254 aaPredicted RBP12.99□□□□□ -0.33
VPS39-210ENST00000568357 TAS2R1Q9NYW7 299 aa12.99□□□□□ -0.33
VPS39-210ENST00000568357 STAB1Q9NY15 2570 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 PLCE1Q9P212 2302 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 TCRBV5S2A0A599 114 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 TMEM129A0AVI4 362 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 A6NIZ1 184 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 B9A039 149 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 H7C1C5 153 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 PDE5AO76074 875 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 MMP7P09237 267 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms