RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 RBM18Q96H35 190 aaKnown RBP12.02□□□□□ -0.49
VPS4A-204ENST00000566354 GPX7Q96SL4 187 aaPredicted RBP12.02□□□□□ -0.49
VPS4A-204ENST00000566354 ALG12Q9BV10 488 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 CA10Q9NS85 328 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 PFDN2Q9UHV9 154 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 PCDHGA5Q9Y5G8 931 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 LILRA5A6NI73 299 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 RHPN2P1A8MT19 583 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 NPIPB9F8W1W9 429 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 PSMD9O00233 223 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 PROS1P07225 676 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 ANXA7P20073 488 aaKnown RBP12.01□□□□□ -0.49
VPS4A-204ENST00000566354 DCTDP32321 178 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 PPM1FP49593 454 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-204ENST00000566354 PSMD4P55036 377 aaKnown RBP12.01□□□□□ -0.49
VPS4A-204ENST00000566354 RPS4XP62701 263 aaKnown RBP12.01□□□□□ -0.49
VPS4A-204ENST00000566354 CBFBQ13951 182 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 LINC01590Q5TEZ4 76 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 LRRN1Q6UXK5 716 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 DNM1P46Q6ZS02 220 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 RNF44Q7L0R7 432 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 CHMP1BQ7LBR1 199 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 PRSS42Q7Z5A4 293 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 DND1Q8IYX4 353 aaKnown RBP12.01□□□□□ -0.49
VPS4A-204ENST00000566354 CSNK1A1LQ8N752 337 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.01□□□□□ -0.49
VPS4A-204ENST00000566354 OR8K3Q8NH51 312 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 OR5AK2Q8NH90 309 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 ZPLD1Q8TCW7 415 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 RASD2Q96D21 266 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 SLC19A3Q9BZV2 496 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 MED9Q9NWA0 146 aa12.01□□□□□ -0.49
VPS4A-204ENST00000566354 A0A0J9YY10 115 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 hCG_1807616A0A1W2PRN6 198 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 MCRIP1C9JLW8 97 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 IMPA2O14732 288 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 CTNSO60931 367 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 ACSM4P0C7M7 580 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 HPGDP15428 266 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 ST6GAL1P15907 406 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 VAMP1P23763 118 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 FAUP35544 74 aaKnown RBP12□□□□□ -0.49
VPS4A-204ENST00000566354 CAPZBP47756 277 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 TAS2R20P59543 309 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 FAM53BQ14153 422 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 TCEAL6Q6IPX3 200 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 ARMC6Q6NXE6 501 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 SLC16A9Q7RTY1 509 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 FAM220AQ7Z4H9 259 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 TCEAL3Q969E4 200 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 G6PC3Q9BUM1 346 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 TSPAN10Q9H1Z9 355 aaPredicted RBP12□□□□□ -0.49
VPS4A-204ENST00000566354 GLS2Q9UI32 602 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 MOKQ9UQ07 419 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 CUL9Q8IWT3 2517 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 PRR32B1ATL7 298 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 GRPRP30550 384 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 SLC25A1P53007 311 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 GFERP55789 205 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 SCAND1P57086 179 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 OR1D5P58170 312 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 ALKBH1Q13686 389 aaKnown RBP12□□□□□ -0.49
VPS4A-204ENST00000566354 STPG1Q5TH74 334 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 LEG1Q6P5S2 330 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 SLC23A3Q6PIS1 610 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 RCBTB1Q8NDN9 531 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 DNAAF1Q8NEP3 725 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 WBP1Q96G27 269 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 VSTM2LQ96N03 204 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 ARRDC1-AS1Q9H2J1 176 aa12□□□□□ -0.49
VPS4A-204ENST00000566354 A0A1B0GWJ7 208 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 HCRTR1O43613 425 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 CLN5O75503 358 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 UPK3AO75631 287 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 RBBP9O75884 186 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 GLSO94925 669 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 RPP14O95059 124 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 CSTAP01040 98 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 PTHLHP12272 177 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 ADRA2CP18825 462 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 CDKN2AP42771 156 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 DLX5P56178 289 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 RPS15P62841 145 aaKnown RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 FLI1Q01543 452 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 NDUFAF6Q330K2 333 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 GXYLT1Q4G148 440 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 FAAP20Q6NZ36 180 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF511Q8NB15 262 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 RIT1Q92963 219 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 MAP3K3Q99759 626 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 Q9N2J8 555 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 FAM60AQ9NP50 221 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 RALGAPA1Q6GYQ0 2036 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 TRBV5-5A0A0J9YX44 114 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 UBE2QL1A1L167 161 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 SERINC4A6NH21 518 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 HMSDA8MTL9 139 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 XRCC3O43542 346 aa11.99□□□□□ -0.49
VPS4A-204ENST00000566354 GALR2O43603 387 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-204ENST00000566354 NUDT21O43809 227 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms