RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CLRN1P58418 232 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 PRKCDQ05655 676 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 RIN1Q13671 783 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 ZNF786Q8N393 782 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 FAM156AQ8NDB6 213 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 NEU4Q8WWR8 484 aaPredicted RBP12.78□□□□□ -0.36
CLN3-213ENST00000565047 PIMREGQ9BSJ6 248 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 SOX7Q9BT81 388 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 BPESC1Q9GZL8 116 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 SMURF2Q9HAU4 748 aa12.78□□□□□ -0.36
CLN3-213ENST00000565047 RTTNQ86VV8 2226 aa12.77□□□□□ -0.36
CLN3-213ENST00000565047 SH3PXD2BA1X283 911 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 CDC42EP2O14613 210 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 MGRN1O60291 552 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 SLC2A10O95528 541 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 SNAP29O95721 258 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 ADRA2AP08913 450 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 TACSTD2P09758 323 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 IFI30P13284 250 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 DAOP14920 347 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 CDAP32320 146 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 MRPS34P82930 218 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 FMODQ06828 376 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 TRAM2Q15035 370 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 IQCCQ4KMZ1 466 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 ALG10Q5BKT4 473 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 CYB5R2Q6BCY4 276 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 TBPL2Q6SJ96 375 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 DPPA2Q7Z7J5 298 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 MEX3DQ86XN8 651 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 NRMQ8IXM6 262 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 RNF113BQ8IZP6 322 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 CLDN22Q8N7P3 220 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 CPEB3Q8NE35 698 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 ZNF519Q8TB69 540 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 GEMIN6Q8WXD5 167 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 LZICQ8WZA0 190 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 ELAC2Q9BQ52 826 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 SIAEQ9HAT2 523 aa12.77□□□□□ -0.37
CLN3-213ENST00000565047 ZNF346Q9UL40 294 aaKnown RBP12.77□□□□□ -0.37
CLN3-213ENST00000565047 IGLV3-9A0A075B6K5 115 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SYNGR3O43761 229 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SNX3O60493 162 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 LILRA1O75019 489 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 ENTPD5O75356 428 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SERPINA1P01009 418 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 IFNW1P05000 195 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 CCL2P13500 99 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 ZNF23P17027 643 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 DRD4P21917 467 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 PSME3P61289 254 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 RPL27P61353 136 aaKnown RBP12.76□□□□□ -0.37
CLN3-213ENST00000565047 GGTLC2Q14390 218 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 TAF11Q15544 211 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 IFI44LQ53G44 452 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 ELFN2Q5R3F8 820 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 FOXL2NBQ6ZUU3 175 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 TMPRSS11FQ6ZWK6 438 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 MBOAT2Q6ZWT7 520 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SLC16A14Q7RTX9 510 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 HDDC2Q7Z4H3 204 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 RBM15BQ8NDT2 890 aaKnown RBP12.76□□□□□ -0.37
CLN3-213ENST00000565047 SLC30A7Q8NEW0 376 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 ACOT11Q8WXI4 607 aaPredicted RBP12.76□□□□□ -0.37
CLN3-213ENST00000565047 MSI2Q96DH6 328 aaKnown RBP12.76□□□□□ -0.37
CLN3-213ENST00000565047 HSH2DQ96JZ2 352 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 C7orf34Q96L11 122 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SYT3Q9BQG1 590 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 REV1Q9UBZ9 1251 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SLC7A8Q9UHI5 535 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 SPEF1Q9Y4P9 236 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 ATRQ13535 2644 aa12.76□□□□□ -0.37
CLN3-213ENST00000565047 MCIDASD6RGH6 385 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 FARS2O95363 451 aaKnown RBP12.75□□□□□ -0.37
CLN3-213ENST00000565047 ZNF682O95780 498 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ZNF250P15622 560 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 NCK1P16333 377 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 PRDX6P30041 224 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ALDH3B1P43353 468 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 NUDT2P50583 147 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ZNF84P51523 738 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ANKDD1AQ495B1 522 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 SLC36A2Q495M3 483 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 FAM27BQ5VT28 67 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 IGFN1Q86VF2 1251 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 LRRC18Q8N456 261 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ARIH2OSQ8N7S6 290 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ZNF540Q8NDQ6 660 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 SLC7A13Q8TCU3 470 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 UBASH3BQ8TF42 649 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 C1orf159Q96HA4 380 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 POM121L2Q96KW2 1035 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 TSPAN32Q96QS1 320 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 FUZQ9BT04 418 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ALG12Q9BV10 488 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 FNDC11Q9BVV2 318 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 TPK1Q9H3S4 243 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 NMNAT1Q9HAN9 279 aaPredicted RBP12.75□□□□□ -0.37
CLN3-213ENST00000565047 NDUFAF4Q9P032 175 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 STX18Q9P2W9 335 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms