RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 GLTPQ9NZD2 209 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 SELENONQ9NZV5 590 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 KLHL14Q9P2G3 628 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 ASH2LQ9UBL3 628 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 EIF3KQ9UBQ5 218 aaKnown RBP6.16□□□□□ -1.42
VPS4A-203ENST00000564399 IL20RAQ9UHF4 553 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 BTNL2Q9UIR0 455 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 ZDHHC8Q9ULC8 765 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 IFT52Q9Y366 437 aa6.16□□□□□ -1.42
VPS4A-203ENST00000564399 IGKV1D-42A0A075B6H8 117 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 A0A1B0GWA3 101 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 A8MXK9 166 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 E9PBE3 544 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 G3V4G9 280 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 DHHO43323 396 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 FZD7O75084 574 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 MFN2O95140 757 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 OR6A2O95222 327 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 CSF1P09603 554 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ADORA3P0DMS8 318 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 PPIAL4GP0DN37 164 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ETFAP13804 333 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SERPINB5P36952 375 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 RBMXP38159 391 aaKnown RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 LIPAP38571 399 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 MPV17P39210 176 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 CDKN2CP42773 168 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 MMP15P51511 669 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 NME5P56597 212 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 DSTNP60981 165 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 BTG1P62324 171 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 TNFAIP6P98066 277 aaPredicted RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ZMYND11Q15326 602 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 MAPK11Q15759 364 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 FAM189A2Q15884 450 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 C2orf68Q2NKX9 166 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 BEAN1Q3B7T3 259 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 PDCD4Q53EL6 469 aaKnown RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SPRNQ5BIV9 151 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ZMAT1Q5H9K5 638 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ALG10BQ5I7T1 473 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 C6orf89Q6UWU4 347 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 UNQ6126/PRO20091Q6UXV3 157 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 WDR88Q6ZMY6 472 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF620Q6ZNG0 422 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 PXKQ7Z7A4 578 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 DPPA2Q7Z7J5 298 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 LRRC28Q86X40 367 aaPredicted RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 C17orf53Q8N3J3 647 aaPredicted RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 ZNF454Q8N9F8 522 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SCAIQ8N9R8 606 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 HIPK4Q8NE63 616 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 BHLHE22Q8NFJ8 381 aaPredicted RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 LINC01006Q8NI28 216 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SLC25A40Q8TBP6 338 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 MRAPQ8TCY5 172 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SLC38A5Q8WUX1 472 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 DNAJA4Q8WW22 397 aaPredicted RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SLC41A3Q96GZ6 507 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 TMEM19Q96HH6 336 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 OR52E6Q96RD3 313 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 RSPO3Q9BXY4 272 aaPredicted RBP6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SLC19A3Q9BZV2 496 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 C12orf10Q9HB07 376 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 MSL2Q9HCI7 577 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 NOX4Q9NPH5 578 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 SLC17A7Q9P2U7 560 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 LRCH1Q9Y2L9 728 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 CHST2Q9Y4C5 530 aa6.15□□□□□ -1.42
VPS4A-203ENST00000564399 KMT2CQ8NEZ4 4911 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 IGHV2-70DA0A0C4DH43 119 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 A0A0G2JPF8 293 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 CEACAM18A8MTB9 384 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 HNRNPCL2B2RXH8 293 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 HNRNPCL3B7ZW38 293 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 LRRN3E7EW58 273 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 F5H0A9 414 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 PLPP3O14495 311 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 TIMM8AO60220 97 aaPredicted RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 PIP5K1CO60331 668 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 HNRNPCL1O60812 293 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 CLPXO76031 633 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 BGLAPP02818 100 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 SHBGP04278 402 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 CD55P08174 381 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ADH4P08319 380 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 QDPRP09417 244 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 FAM153BP0C7A2 387 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 HNRNPCL4P0DMR1 293 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 TNFRSF1AP19438 455 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 TNFSF4P23510 183 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 MDH2P40926 338 aaKnown RBP6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF84P51523 738 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 GNB2P62879 340 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 WHAMMP3Q1A5X7 153 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 TTMPQ5BVD1 217 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 PABPC1L2AQ5JQF8 200 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 CEP85LQ5SZL2 805 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 GPR157Q5UAW9 335 aa6.14□□□□□ -1.43
VPS4A-203ENST00000564399 ULK3Q6PHR2 472 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms