RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF738Q8NE65 137 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 B3GNT7Q8NFL0 401 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 OR1K1Q8NGR3 316 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 OR6K3Q8NGY3 331 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ZFP90Q8TF47 636 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ELMOD3Q96FG2 381 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TMEM19Q96HH6 336 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 RNF170Q96K19 258 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ZNF354BQ96LW1 612 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 COL21A1Q96P44 957 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 OR8B4Q96RC9 309 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SDHCQ99643 169 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 LMF2Q9BU23 707 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 ABHD14AQ9BUJ0 271 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 BEX2Q9BXY8 128 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 BARHL1Q9BZE3 327 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 FAM96AQ9H5X1 160 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SFXN1Q9H9B4 322 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SLC28A3Q9HAS3 691 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 LMAN1LQ9HAT1 526 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 PLEKHA1Q9HB21 404 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 CACYBPQ9HB71 228 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 RAB18Q9NP72 206 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 GKN1Q9NS71 199 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SLC22A11Q9NSA0 550 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 C2orf42Q9NWW7 574 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 OR14J1Q9UGF5 321 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 KIF25Q9UIL4 384 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ICAM5Q9UMF0 924 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SNX12Q9UMY4 172 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 CSDC2Q9Y534 153 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 PPIAL4AQ9Y536 164 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 STYXL1Q9Y6J8 313 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ABCC2Q92887 1545 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TRAV8-7A0A075B6U6 113 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 A0A0G2JK05 382 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 PLRG1O43660 514 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 FKBP6O75344 327 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 TNFSF15O95150 251 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 RCBTB2O95199 551 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CNIH1O95406 144 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 IGSF6O95976 241 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 IFNA7P01567 189 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 NR3C1P04150 777 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CD48P09326 243 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 RAB40ALP0C0E4 278 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 ETFAP13804 333 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 FOLR1P15328 257 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 TNFRSF1BP20333 461 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 RAB3BP20337 219 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CBLP22681 906 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CXCR1P25024 350 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 F2RP25116 425 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 IVDP26440 423 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CEACAM8P31997 349 aaPredicted RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 CCKBRP32239 447 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR1D2P34982 312 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 QARSP47897 775 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 TDGF1P3P51864 188 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 GALCP54803 685 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CDKN2DP55273 166 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 TLE3Q04726 772 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 EMX1Q04741 257 aaPredicted RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 GTF2H2Q13888 395 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 GK2Q14410 553 aaPredicted RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 PRTGQ2VWP7 1150 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 AGKQ53H12 422 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 GTF2H2CQ6P1K8 395 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 PNCKQ6P2M8 343 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 NIPAL3Q6P499 406 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 SMARCD3Q6STE5 483 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 ATRAIDQ6UW56 229 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 SLC36A1Q7Z2H8 476 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CPEB2Q7Z5Q1 589 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 ARPINQ7Z6K5 226 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CTU1Q7Z7A3 348 aaKnown RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 CATSPER3Q86XQ3 398 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 SLC34A3Q8N130 599 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 PAQR4Q8N4S7 273 aaPredicted RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 ACBD7Q8N6N7 88 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 LRRC52Q8N7C0 313 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CDRT4Q8N9R6 151 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR7G2Q8NG99 324 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR4M2Q8NGB6 313 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR10G3Q8NGC4 313 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR10S1Q8NGN2 331 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR1L4Q8NGR5 311 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR4S2Q8NH73 311 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 OR10A6Q8NH74 314 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 WDR20Q8TBZ3 569 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 LGALS14Q8TCE9 139 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 NPRL2Q8WTW4 380 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 DEDD2Q8WXF8 326 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 IGSF8Q969P0 613 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 SLC25A28Q96A46 364 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 RERGQ96A58 199 aaPredicted RBP4.54□□□□□ -1.68
VPS35-205ENST00000563984 TM4SF18Q96CE8 201 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 CMBLQ96DG6 245 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 MOCOSQ96EN8 888 aa4.54□□□□□ -1.68
VPS35-205ENST00000563984 MS4A14Q96JA4 679 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms